4P6Z
Crystal structure of the human BST2 cytoplasmic domain and the HIV-1 Vpu cytoplasmic domain bound to the clathrin adaptor protein complex 1 (AP1) core
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth S] | d4p6zs_ | Alpha and beta proteins (a+b) | Profilin-like | SNARE-like | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d4p6zb_ | All alpha proteins | alpha-alpha superhelix | ARM repeat | Clathrin adaptor core protein | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2B Superfamily | ARM repeat-like | 8078176 | 3000116 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2 Family | Clathrin coat assembly domain | 8082706 | 4002754 | SCOP2 (2022-06-29) |
B [auth S] | SCOP2 Superfamily | SNARE-like | 8082707 | 3001113 | SCOP2 (2022-06-29) |
C [auth M] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2 Family | Clathrin adaptor core protein | 8082786 | 4001978 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | ARM repeat-like | 8082787 | 3000116 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | Adaptin_N | e4p6zG1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
B [auth S] | Clat_adaptor_s | e4p6zS1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
C [auth M] | Adap_comp_sub_2nd | e4p6zM2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
C [auth M] | Adap_comp_sub_2nd,Adap_comp_sub_1st | e4p6zM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd,Adap_comp_sub_1st | ECOD (1.6) |
C [auth M] | Clat_adaptor_s | e4p6zM3 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
D [auth B] | Adaptin_N | e4p6zB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth G] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
B [auth S] | 3.30.450.60 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) | |
C [auth M] | 3.30.450.60 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) | |
D [auth B] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
B [auth S] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
C [auth M] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
C [auth M] | PF00928 | Adaptor complexes medium subunit family (Adap_comp_sub) | Adaptor complexes medium subunit family | - | Family |