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Crystal structure of yeast RNase III (Rnt1p) complexed with the product of dsRNA processing
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | dsRNA-binding domain-like | 8039971 | 3000985 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18497 | e4oogA1 | A: alpha arrays | X: Ribonuclease 3 N-terminal domain (From Topology) | H: Ribonuclease 3 N-terminal domain (From Topology) | T: Ribonuclease 3 N-terminal domain | F: PF18497 | ECOD (1.6) |
B | PF18497 | e4oogB1 | A: alpha arrays | X: Ribonuclease 3 N-terminal domain (From Topology) | H: Ribonuclease 3 N-terminal domain (From Topology) | T: Ribonuclease 3 N-terminal domain | F: PF18497 | ECOD (1.6) |
C | PF00636 | e4oogC2 | A: alpha arrays | X: RNase III catalytic domain-like (From Topology) | H: RNase III catalytic domain-like (From Topology) | T: RNase III catalytic domain-like | F: PF00636 | ECOD (1.6) |
C | PF00035 | e4oogC1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00035 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 1.10.1520.10 | Mainly Alpha | Orthogonal Bundle | Ribonuclease iii, N-terminal Endonuclease Domain | Chain A | CATH (4.3.0) |
C | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18497 | Ribonuclease III N-terminal domain (RNase_3_N) | Ribonuclease III N-terminal domain | This is the N-terminal domain of eukaryotic ribonuclease 3 (RNase III, EC:3.1.26.3). Structure analysis of Saccharomyces cerevisiaeRNase III (Rnt1p) :RNA revealed specific contacts between the N-terminal domain (NTD) dimer and the 5' end region of th ... | Domain | |
PF00636 | Ribonuclease III domain (Ribonuclease_3) | Ribonuclease III domain | - | Family | |
PF00035 | Double-stranded RNA binding motif (dsrm) | Double-stranded RNA binding motif | Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044449 | Rnt1/Pac1, double-stranded RNA binding domain, fungi | Domain | |
IPR000999 | Ribonuclease III domain | Domain | |
IPR036389 | Ribonuclease III, endonuclease domain superfamily | Homologous Superfamily | |
IPR014720 | Double-stranded RNA-binding domain | Domain | |
IPR040540 | Ribonuclease III, N-terminal domain | Domain | |
IPR044449 | Rnt1/Pac1, double-stranded RNA binding domain, fungi | Domain | |
IPR000999 | Ribonuclease III domain | Domain | |
IPR036389 | Ribonuclease III, endonuclease domain superfamily | Homologous Superfamily | |
IPR014720 | Double-stranded RNA-binding domain | Domain | |
IPR040540 | Ribonuclease III, N-terminal domain | Domain |