4ON1
Crystal Structure of metalloproteinase-II from Bacteroides fragilis
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | fragilysinNterm_1 | e4on1A2 | A: a+b two layers | X: Fragilysin-3 prodomain-like | H: Fragilysin-3 prodomain (From Topology) | T: Fragilysin-3 prodomain | F: fragilysinNterm_1 | ECOD (1.6) |
A | Reprolysin | e4on1A1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Reprolysin | ECOD (1.6) |
B | fragilysinNterm_1 | e4on1B2 | A: a+b two layers | X: Fragilysin-3 prodomain-like | H: Fragilysin-3 prodomain (From Topology) | T: Fragilysin-3 prodomain | F: fragilysinNterm_1 | ECOD (1.6) |
B | Reprolysin | e4on1B1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Reprolysin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.128.470 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
A | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
B | 2.40.128.470 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
B | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00413 | Matrixin (Peptidase_M10) | Matrixin | The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. | Domain | |
PF16376 | N-terminal domain of fragilysin (fragilysinNterm) | N-terminal domain of fragilysin | N-terminal domain of fragilysin, an extracellular metalloprotease toxin, which is primary virulence factor of B. fragilis, an oportunistic pathogen of human gut. The N-terminal domain of fragilysin inhibits fragilysin and is cleaved ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative metalloprotease II |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038176 | Fragilysin, N-terminal domain superfamily | Homologous Superfamily | |
IPR006026 | Peptidase, metallopeptidase | Domain | |
IPR024079 | Metallopeptidase, catalytic domain superfamily | Homologous Superfamily | |
IPR032273 | Fragilysin, N-terminal | Domain | |
IPR001818 | Peptidase M10, metallopeptidase | Domain | |
IPR001843 | Fragilysin | Family |