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 4ON0 | pdb_00004on0

Crystal Structure of NolR from Sinorhizobium fredii in complex with oligo AA DNA

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyWinged helix DNA-binding domain 8067782 3000034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyWinged helix DNA-binding domain 8067782 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8067782 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8067782 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPDH_Ce4on0D1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: PDH_CECOD (v295.2)
CPDH_Ce4on0C1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: PDH_CECOD (v295.2)
BPDH_Ce4on0B1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: PDH_CECOD (v295.2)
APDH_Ce4on0A1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: PDH_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
C1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
B1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
A1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth F],
H		DNA (5 -D(*TP*AP*AP*TP*CP*TP*CP*TP*TP*GP*GP*GP*AP*CP*TP*AP*CP*AP*AP*TP*TP*A)-3 )---
E,
F [auth G]		DNA (5 -D(*TP*AP*TP*TP*AP*GP*AP*GP*AP*AP*CP*CP*CP*TP*GP*AP*TP*GP*TP*TP*AP*A)-3 )---
A, B, C, D
NolR - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR001845HTH ArsR-type DNA-binding domainDomain
A, B, C, D
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D
IPR011991ArsR-like helix-turn-helix domainDomain
A, B, C, D
IPR051011Metal-responsive transcriptional regulatorFamily
A, B, C, D
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily