4OCM
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | JAB1/MPN domain-like | 8053272 | 3001105 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | JAB1/MPN domain-like | 8053272 | 3001105 | SCOP2B (2022-06-29) |
B | SCOP2 Family | JAB1/Mov34/MPN/PAD-1/JAMM domain-like | 8048101 | 4006292 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | JAB1/MPN domain-like | 8053248 | 3001105 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | JAB1/MPN domain-like | 8053248 | 3001105 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01398 | e4ocmA1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
D | PF01398 | e4ocmD1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
B | PF01398 | e4ocmB1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
E | PF01398 | e4ocmE1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
C | PF07686 | e4ocmC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F | PF07686 | e4ocmF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
D | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
B | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
E | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | 26s proteasome regulatory subunit rpn11 | 26s proteasome regulatory subunit rpn8 | SAbDab (2024-08-09) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024969 | EIF3F/CSN6-like, C-terminal | Domain | |
IPR037518 | MPN domain | Domain | |
IPR033858 | 26S Proteasome non-ATPase regulatory subunit 7/8 | Family | |
IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain | |
IPR050242 | JAMM/MPN+ metalloenzymes, peptidase M67A | Family | |
IPR037518 | MPN domain | Domain | |
IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain |