4O6H
2.8A crystal structure of Lymphocytic Choriomeningitis Virus Nucleoprotein C-terminal Domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribonuclease H-like | 8053528 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Arena_ncap_C | e4o6hA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
B | Arena_ncap_C | e4o6hB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
C | Arena_ncap_C | e4o6hC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
D | Arena_ncap_C | e4o6hD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
E | Arena_ncap_C | e4o6hE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
F | Arena_ncap_C | e4o6hF1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
G | Arena_ncap_C | e4o6hG1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
H | Arena_ncap_C | e4o6hH1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Arena_ncap_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17290 | Arenavirus nucleocapsid C-terminal domain (Arena_ncap_C) | Arenavirus nucleocapsid C-terminal domain | This domain represents the the C-terminal domain that contains 3'-5' exoribonuclease activity involved in suppressing interferon induction [1]. This domain has an RNaseH-like fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038115 | Nucleocapsid, C-terminal superfamily | Homologous Superfamily | |
IPR000229 | Nucleocapsid protein, arenaviridae | Family | |
IPR035083 | Nucleocapsid, N-terminal, Arenaviridae | Domain | |
IPR035084 | Nucleocapsid, C-terminal, Arenaviridae | Domain |