4O4U
Crystal structure of the vaccine antigen Transferrin Binding Protein B (TbpB) mutant Trp-176-Ala from Haemophilus parasuis Hp5
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052212 | 3002099 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052213 | 3002099 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8052211 | 3002098 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8047027 | 3002098 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052212 | 3002099 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052213 | 3002099 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8047027 | 3002098 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8052211 | 3002098 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8047027 | 3002098 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052213 | 3002099 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052212 | 3002099 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8052211 | 3002098 | SCOP2B (2022-06-29) |
D | SCOP2 Family | N-lobe and C-lobe of Tf-binding protein B-like | 8047018 | 4006246 | SCOP2 (2022-06-29) |
D | SCOP2 Family | N-lobe and C-lobe of Tf-binding protein B-like | 8048879 | 4006246 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8052211 | 3002098 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TbpB N-lobe and C-lobe beta-barrel domains-like | 8047027 | 3002098 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052212 | 3002099 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TbpB N-lobe and C-lobe handle domains-like | 8052213 | 3002099 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TbpB_C | e4o4uA2 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_C | ECOD (1.6) |
A | TbpB_A | e4o4uA4 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_A | ECOD (1.6) |
A | TbpB_B_D | e4o4uA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: TbpB_B_D | ECOD (1.6) |
B | TbpB_C | e4o4uB1 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_C | ECOD (1.6) |
B | TbpB_A | e4o4uB4 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_A | ECOD (1.6) |
B | TbpB_B_D | e4o4uB3 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: TbpB_B_D | ECOD (1.6) |
C | TbpB_C | e4o4uC1 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_C | ECOD (1.6) |
C | TbpB_A | e4o4uC3 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_A | ECOD (1.6) |
C | TbpB_B_D | e4o4uC2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: TbpB_B_D | ECOD (1.6) |
D | TbpB_C | e4o4uD2 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_C | ECOD (1.6) |
D | TbpB_A | e4o4uD4 | A: beta barrels | X: Handle domain in transferrin-binding protein B (From Topology) | H: Handle domain in transferrin-binding protein B (From Topology) | T: Handle domain in transferrin-binding protein B | F: TbpB_A | ECOD (1.6) |
D | TbpB_B_D | e4o4uD3 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: TbpB_B_D | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.128.250 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
A | 2.40.160.90 | Mainly Beta | Beta Barrel | Porin | CATH (4.3.0) | |
A | 2.40.128.240 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
B | 2.40.128.250 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
B | 2.40.160.90 | Mainly Beta | Beta Barrel | Porin | CATH (4.3.0) | |
B | 2.40.128.240 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
C | 2.40.128.250 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
C | 2.40.160.90 | Mainly Beta | Beta Barrel | Porin | CATH (4.3.0) | |
C | 2.40.128.240 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
D | 2.40.128.250 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
D | 2.40.160.90 | Mainly Beta | Beta Barrel | Porin | CATH (4.3.0) | |
D | 2.40.128.240 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17483 | C-lobe handle domain of Tf-binding protein B (TbpB_C) | C-lobe handle domain of Tf-binding protein B | Bacterial lipoproteins represent a large group of specialised membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis ... | Domain | |
PF01298 | C-lobe and N-lobe beta barrels of Tf-binding protein B (TbpB_B_D) | C-lobe and N-lobe beta barrels of Tf-binding protein B | Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
TbpB | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011250 | Outer membrane protein/outer membrane enzyme PagP, beta-barrel | Homologous Superfamily | |
IPR001677 | Transferrin-binding protein B, C-lobe/N-lobe beta-barrel domain | Domain | |
IPR038669 | TbpB, N-lobe handle domain superfamily | Homologous Superfamily | |
IPR038197 | TbpB, C-lobe handle domain superfamily | Homologous Superfamily | |
IPR035316 | Transferrin-binding protein B, C-lobe handle domain | Domain |