Crystal Structure of a Computationally Designed RSV-Presenting Epitope Scaffold And Its Elicited Antibody 17HD9
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | MreC | e4n9gE1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| I [auth M] | MreC | e4n9gM1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| G [auth H] | MreC | e4n9gH1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| A | NusG_II | e4n9gA1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: NusG_II | ECOD (v295.2) |
| B | NusG_II | e4n9gB1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: NusG_II | ECOD (v295.2) |
| H [auth L] | MreC | e4n9gL1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| J [auth N] | MreC | e4n9gN1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| F | MreC | e4n9gF1 | A: alpha arrays | X: DEATH domain | H: 6-phosphogluconate dehydrogenase C-terminal domain-like | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: MreC | ECOD (v295.2) |
| C | Med6 | e4n9gC1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
| D | Med6 | e4n9gD1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
| K [auth Y] | Med6 | e4n9gY1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
| L [auth Z] | Med6 | e4n9gZ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Med6 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| I [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| G [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| H [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| J [auth N] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| A, E, G [auth H], I [auth M] | 17HD9 Fab | VH-CH1 | Homo sapiens (human) | IGHV4-34*09, IGHV4-59*01, IGHV4-59*02, IGHV4-59*08, IGHV4-4*08, IGHJ3*01, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202633-0) |
| B, F, H [auth L], J [auth N] | 17HD9 Fab | L-KAPPA | Homo sapiens (human) | IGKV1-16*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202633-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| A, E, G [auth H], I [auth M] | Heavy Chain | IGHV4 | - | epitope scaffold rsv_1isea_ffl_001_c | SAbDab (2026-08-28) |
| B, F, H [auth L], J [auth N] | Light Chain | IGKV1 | Kappa | epitope scaffold rsv_1isea_ffl_001_c | SAbDab (2026-08-28) |
