Annotations: 4N8M

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4n8md_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like core domain	Nucleoplasmin-like core domain	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d4n8ma_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like core domain	Nucleoplasmin-like core domain	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d4n8mb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like core domain	Nucleoplasmin-like core domain	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d4n8mc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like core domain	Nucleoplasmin-like core domain	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E	d4n8me_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like core domain	Nucleoplasmin-like core domain	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Nucleoplasmin-like core domain	8072509	3002011	SCOP2B (2021-05-27)
A	SCOP2 Family	Nucleoplasmin-like core domain	8072508	4003012	SCOP2 (2021-05-27)
A	SCOP2 Superfamily	Nucleoplasmin-like core domain	8072509	3002011	SCOP2 (2021-05-27)
B	SCOP2B Superfamily	Nucleoplasmin-like core domain	8072509	3002011	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	Nucleoplasmin-like core domain	8072509	3002011	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	Nucleoplasmin-like core domain	8072509	3002011	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PF03066	e4n8mD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03066	ECOD (1.6)
A	PF03066	e4n8mA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03066	ECOD (1.6)
B	PF03066	e4n8mB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03066	ECOD (1.6)
C	PF03066	e4n8mC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03066	ECOD (1.6)
E	PF03066	e4n8mE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03066	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.340	Mainly Beta	Sandwich	Jelly Rolls	Nucleoplasmin core domain	CATH (4.3.0)
A	2.60.120.340	Mainly Beta	Sandwich	Jelly Rolls	Nucleoplasmin core domain	CATH (4.3.0)
B	2.60.120.340	Mainly Beta	Sandwich	Jelly Rolls	Nucleoplasmin core domain	CATH (4.3.0)
C	2.60.120.340	Mainly Beta	Sandwich	Jelly Rolls	Nucleoplasmin core domain	CATH (4.3.0)
E	2.60.120.340	Mainly Beta	Sandwich	Jelly Rolls	Nucleoplasmin core domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF03066	Nucleoplasmin/nucleophosmin domain (Nucleoplasmin)	Nucleoplasmin/nucleophosmin domain	Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Nucleophosmin	protein binding binding histone binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding NF-kappaB binding protein kinase B binding kinase binding enzyme binding protein kinase binding RNA binding organic cyclic compound binding rRNA binding protein binding binding histone binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding NF-kappaB binding protein kinase B binding kinase binding enzyme binding protein kinase binding RNA binding organic cyclic compound binding rRNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding ribonucleoprotein complex binding protein-containing complex binding ribosomal large subunit binding ribosome binding identical protein binding p53 binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity chromatin binding unfolded protein binding phosphatidylinositol-3,4,5-trisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding ribosomal small subunit binding	regulation of cellular process negative regulation of biological process regulation of mRNA splicing, via spliceosome mRNA processing negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process negative regulation of mRNA splicing, via spliceosome negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process RNA processing negative regulation of mRNA processing regulation of biological process regulation of cellular process negative regulation of biological process regulation of mRNA splicing, via spliceosome mRNA processing negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process negative regulation of mRNA splicing, via spliceosome negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process RNA processing negative regulation of mRNA processing regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process negative regulation of mRNA metabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of mRNA processing RNA splicing biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process regulation of RNA splicing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of RNA splicing RNA splicing, via transesterification reactions negative regulation of biosynthetic process mRNA splicing, via spliceosome cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile regulation of mRNA metabolic process regulation of catalytic activity negative regulation of catalytic activity regulation of transferase activity negative regulation of kinase activity negative regulation of transferase activity regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process protein metabolic process organonitrogen compound metabolic process negative regulation of protein kinase activity by regulation of protein phosphorylation negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation cell cycle G2/M phase transition regulation of cell cycle phase transition regulation of cell cycle process positive regulation of biological process regulation of cell cycle G2/M phase transition cell cycle phase transition positive regulation of cell cycle G2/M phase transition positive regulation of cell cycle positive regulation of cell cycle phase transition positive regulation of cell cycle process cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process regulation of protein stability regulation of biological quality protein stabilization protein localization localization cellular localization cellular macromolecule localization macromolecule localization regulation of cellular component organization positive regulation of centrosome duplication microtubule cytoskeleton organization cellular component organization centrosome duplication centrosome cycle cellular component organization or biogenesis microtubule organizing center organization regulation of centrosome cycle regulation of microtubule-based process organelle organization regulation of centrosome duplication microtubule-based process cytoskeleton organization regulation of ribonuclease activity regulation of endoribonuclease activity regulation of hydrolase activity regulation of nuclease activity nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport establishment of localization positive regulation of nucleobase-containing compound metabolic process positive regulation of DNA replication DNA metabolic process positive regulation of metabolic process DNA replication positive regulation of DNA metabolic process positive regulation of macromolecule metabolic process regulation of DNA metabolic process regulation of DNA replication regulation of growth growth regulation of cell growth cell growth post-transcriptional regulation of gene expression cellular response to stimulus cellular response to stress response to stimulus response to stress cellular senescence regulation of localization regulation of protein localization positive regulation of protein localization to nucleolus positive regulation of protein localization to nucleus regulation of protein localization to nucleus protein localization to nucleus protein localization to nucleolus regulation of cellular localization protein localization to organelle positive regulation of protein localization regulation of protein localization to nucleolus DNA damage response DNA repair DNA-templated transcription rRNA transcription rRNA metabolic process negative regulation of cardiac muscle cell apoptotic process muscle cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death cell death cardiac muscle cell apoptotic process negative regulation of apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process negative regulation of muscle cell apoptotic process negative regulation of striated muscle cell apoptotic process apoptotic process programmed cell death positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular biosynthetic process negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription cellular response to nitrogen compound regulation of cellular response to stress organonitrogen compound biosynthetic process regulation of translational initiation by eIF2 alpha phosphorylation translational initiation response to organic cyclic compound cellular response to dsRNA regulation of translational initiation cellular response to organic cyclic compound response to nitrogen compound regulation of response to stimulus response to chemical regulation of translation in response to stress regulation of response to stress regulation of eIF2 alpha phosphorylation by dsRNA response to dsRNA translation cellular response to chemical stimulus regulation of translation regulation of translational initiation in response to stress non-membrane-bounded organelle assembly cellular component biogenesis cellular component assembly regulation of centriole replication centriole replication centriole assembly organelle assembly regulation of cellular component biogenesis regulation of organelle organization regulation of organelle assembly establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus protein-containing complex localization ribosome biogenesis ribosomal small subunit export from nucleus organelle localization nuclear export ribosome localization regulation of endodeoxyribonuclease activity regulation of deoxyribonuclease activity neuron apoptotic process regulation of neuron apoptotic process regulation of cellular component size homeostatic process cell volume homeostasis cellular homeostasis regulation of cell size regulation of anatomical structure size positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification positive regulation of protein modification process protein ubiquitination regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal ribosomal large subunit export from nucleus signaling regulation of signal transduction DNA damage response, signal transduction by p53 class mediator intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of signal transduction by p53 class mediator signal transduction regulation of DNA damage response, signal transduction by p53 class mediator regulation of signaling signal transduction by p53 class mediator regulation of cell communication signal transduction in response to DNA damage negative regulation of neuron apoptotic process positive regulation of cell population proliferation positive regulation of translation positive regulation of gene expression ribosomal large subunit biogenesis ribosomal small subunit biogenesis protein-DNA complex organization protein-containing complex organization chromatin organization chromatin remodeling rRNA processing cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cytoplasm cytosol protein-containing complex small ribosomal subunit ribosomal subunit ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle large ribosomal subunit nuclear periphery nuclear matrix nucleolus granular component centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR036824	Nucleoplasmin core domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR032569	Nucleophosmin, C-terminal	Domain
A, B, C, D, E	IPR004301	Nucleoplasmin family	Family
A, B, C, D, E	IPR024057	Nucleoplasmin core domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.