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 4N8G | pdb_00004n8g

Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0660), Target EFI-501075, with bound D-alanine-D-alanine

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd4n8gd_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)
Cd4n8gc_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)
Bd4n8gb1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)
Bd4n8gb2 Artifacts Tags Tags Tags C-terminal Tags (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)
Ad4n8ga1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)
Ad4n8ga2 Artifacts Tags Tags Tags C-terminal Tags (Chromohalobacter israelensis DSM 3043 ) [TaxId: 290398 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DThiFe4n8gD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: ThiFECOD (v295.2)
CThiFe4n8gC1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: ThiFECOD (v295.2)
BThiFe4n8gB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: ThiFECOD (v295.2)
ALysR_substratee4n8gA1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: LysR_substrateECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
C3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF03480Bacterial extracellular solute-binding protein, family 7 (DctP)Bacterial extracellular solute-binding protein, family 7- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
TRAP dicarboxylate transporter, DctP subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR018389TRAP transporter solute receptor DctPFamily
A, B, C, D
IPR038404TRAP transporter solute receptor DctP superfamilyHomologous Superfamily
A, B, C, D
IPR004682TRAP transporter solute receptor, DctP familyFamily