4N4R
Structure basis of lipopolysaccharide biogenesis
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | LptD-like barrel | 8053493 | 3002195 | SCOP2B (2022-06-29) |
C | SCOP2 Family | LptD C-terminal domain-like | 8045950 | 4004780 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | LptD-like barrel | 8053493 | 3002195 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | TolB N-terminal domain-like | 8053480 | 3000482 | SCOP2B (2022-06-29) |
D | SCOP2 Family | LptE-like | 8045853 | 4004725 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TolB N-terminal domain-like | 8053480 | 3000482 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OstA_C | e4n4rA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: OstA_C | ECOD (1.6) |
C | OstA_C | e4n4rC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: OstA_C | ECOD (1.6) |
B | LptE | e4n4rB1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: LptE | ECOD (1.6) |
D | LptE | e4n4rD1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: LptE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.160.150 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Lipoprotein like domain | CATH (4.3.0) |
D | 3.30.160.150 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Lipoprotein like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04453 | LPS transport system D (LptD) | LPS transport system D | - | Family | |
PF04390 | Lipopolysaccharide-assembly (LptE) | Lipopolysaccharide-assembly | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007543 | LptD, C-terminal | Domain | |
IPR020889 | LPS-assembly protein LptD | Family | |
IPR050218 | Lipopolysaccharide Assembly Protein LptD | Family | |
IPR005653 | Organic solvent tolerance-like, N-terminal | Domain | |
IPR007485 | LPS-assembly lipoprotein LptE | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Lipopolysaccharide (LPS) Transport Proteins | LptD-LptE lipopolysaccharide transport complex |