Annotations: 4MAN

Bcl_2-Navitoclax Analog (with Indole) Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4manb_	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	Bcl-2 inhibitors of programmed cell death	Bcl-2 inhibitors of programmed cell death	Bcl-2	human (Homo sapiens ) [TaxId: 9606 ], human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4mana_	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	Bcl-2 inhibitors of programmed cell death	Bcl-2 inhibitors of programmed cell death	Bcl-2	human (Homo sapiens ) [TaxId: 9606 ], human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4manB1	A: alpha arrays	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F:	ECOD (v295.2)
A	P53	e4manA1	A: alpha arrays	X: MHC antigen-recognition domain	H: MHC antigen-recognition domain	T: MHC antigen-recognition domain	F: P53	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Apoptosis regulator Bcl-2	sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding protein phosphatase binding phosphatase binding protein phosphatase 2A binding protease binding protein heterodimerization activity protein dimerization activity transcription factor binding DNA-binding transcription factor binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity molecular function inhibitor activity transporter inhibitor activity channel regulator activity molecular function regulator activity channel inhibitor activity transporter regulator activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of calcium ion transport regulation of localization regulation of biological process transport regulation of transport regulation of monoatomic ion transport biological regulation establishment of localization metal ion transport calcium ion transport localization monoatomic ion transport regulation of metal ion transport monoatomic cation transport regulation of cellular process regulation of mitochondrial depolarization negative regulation of membrane depolarization negative regulation of biological process mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization regulation of biological quality negative regulation of mitochondrial depolarization regulation of membrane potential catabolic process autophagy metabolic process process utilizing autophagic mechanism apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process response to radiation response to abiotic stimulus negative regulation of programmed cell death regulation of anoikis negative regulation of anoikis negative regulation of apoptotic process anoikis negative regulation of cellular process response to toxic substance developmental process multicellular organismal process epithelium development epidermis development molting cycle process hair cycle epidermis morphogenesis animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis skin development skin epidermis development hair follicle development molting cycle anatomical structure development hair cycle process hair follicle morphogenesis animal gross anatomical part developmental process response to metal ion response to iron ion extrinsic apoptotic signaling pathway via death domain receptors cell surface receptor signaling pathway signaling extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway signal transduction signal transduction in absence of ligand extrinsic apoptotic signaling pathway in absence of ligand protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal negative regulation of catabolic process negative regulation of metabolic process regulation of catabolic process regulation of autophagy negative regulation of autophagy regulation of metabolic process pigmentation positive regulation of cell population proliferation positive regulation of B cell proliferation regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte proliferation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation B cell activation cell activation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of B cell activation regulation of cell population proliferation mononuclear cell proliferation immune system process positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation positive regulation of multicellular organismal process regulation of lymphocyte activation biological process involved in interspecies interaction between organisms defense response to virus defense response response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus regulation of growth regulation of cellular component organization growth positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular component organization or biogenesis immune response-regulating cell surface receptor signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response immune response-activating cell surface receptor signaling pathway immune response B cell receptor signaling pathway regulation of response to stimulus regulation of immune response antigen receptor-mediated signaling pathway activation of immune response negative regulation of extrinsic apoptotic signaling pathway in absence of ligand negative regulation of signaling regulation of signal transduction negative regulation of cell communication negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication regulation of apoptotic signaling pathway multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process humoral immune response response to peptide response to cytokine negative regulation of intracellular signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction regulation of intracellular signal transduction intrinsic apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway neuron apoptotic process negative regulation of neuron apoptotic process regulation of neuron apoptotic process regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator regulation of response to stress regulation of signal transduction by p53 class mediator signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator regulation of intrinsic apoptotic signaling pathway by p53 class mediator regulation of viral life cycle regulation of viral process viral genome replication viral process regulation of viral genome replication viral life cycle intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress response to endoplasmic reticulum stress response to nicotine regulation of membrane permeability regulation of mitochondrial membrane permeability apoptotic mitochondrial changes release of cytochrome c from mitochondria organelle organization mitochondrion organization	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoplasm cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoplasm cytosol mitochondrial membrane mitochondrion organelle outer membrane bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane protein-containing complex pore complex membrane protein complex myelin sheath Bcl-2 family protein complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
A, B	IPR004725	Apoptosis regulator, Bcl-2/ BclX	Family
A, B	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
A, B	IPR002475	Bcl2-like	Family
A, B	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
A, B	IPR020728	Apoptosis regulator, Bcl-2, BH3 motif, conserved site	Conserved Site
A, B	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
A, B	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
A, B	IPR013278	Apoptosis regulator, Bcl-2	Family
A, B	IPR026298	Bcl-2 family	Family
A, B	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: P10415	B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease malignant mesothelioma synovial sarcoma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease malignant mesothelioma synovial sarcoma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma type 2 diabetes mellitus esophageal cancer breast carcinoma clear cell adenocarcinoma Metaplasia alcoholic liver cirrhosis contact dermatitis sarcomatoid carcinoma hypertensive disorder asthma intestinal cancer adenocarcinoma carcinoma adenoma prostate cancer follicular thyroid adenoma microcystic adenoma myocardial infarction granular cell carcinoma allergic contact dermatitis azoospermia tubular adenocarcinoma erectile dysfunction breast cancer cancer gallbladder cancer colorectal cancer multiple epiphyseal dysplasia head and neck cancer coronary artery disease neoplasm of neck hematologic disease Schwartz-Jampel syndrome depressive disorder neurodegenerative disease skin disease inborn carbohydrate metabolic disorder spondyloepiphyseal dysplasia tarda, X-linked ovarian disease intestinal neoplasm transitional cell carcinoma malignant tumor of neck ductal breast carcinoma in situ ischemia reperfusion injury bipolar disorder maturity-onset diabetes of the young plasma cell neoplasm uterine disease prostate carcinoma gallbladder neoplasm psoriasis lymphatic system disease colorectal carcinoma myeloid neoplasm glioblastoma reticulum cell sarcoma neoplasm of esophagus head and neck neoplasm cribriform carcinoma non-alcoholic fatty liver disease osteosarcoma autoimmune disease stomach disease pancreatic intraductal papillary-mucinous carcinoma benign colon neoplasm tuberculosis pituitary cancer kidney disease bipolar I disorder undifferentiated carcinoma medulloblastoma learning disability breast disease fetal alcohol spectrum disorder liver disease prostate disease lung cancer colonic neoplasm gastric cancer lymphoma neoplasm of mature B-cells schizophrenia cribriform carcinoma of breast Sjogren syndrome lymphosarcoma non-Hodgkin lymphoma idiopathic scoliosis autism spondyloepiphyseal dysplasia ovarian cancer intestinal disease pancreatic intraductal papillary-mucinous neoplasm intracerebral hemorrhage benign connective and soft tissue neoplasm toxic encephalopathy large cell medulloblastoma Melnick-Needles syndrome eye disease fetal alcohol syndrome cerebrovascular disorder lung disease gastric carcinoma connective tissue disease sarcoidosis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.