4LS4
Crystal structure of L66S mutant toxin from Helicobacter pylori
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4ls4a1 | Alpha and beta proteins (a+b) | RelE-like | RelE-like | RelE-like | automated matches | (Helicobacter pylori 26695 ) [TaxId: 85962 ], | SCOPe (2.08) |
A | d4ls4a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Helicobacter pylori 26695 ) [TaxId: 85962 ], | SCOPe (2.08) |
B | d4ls4b1 | Alpha and beta proteins (a+b) | RelE-like | RelE-like | RelE-like | automated matches | (Helicobacter pylori 26695 ) [TaxId: 85962 ], | SCOPe (2.08) |
B | d4ls4b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Helicobacter pylori 26695 ) [TaxId: 85962 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YafQ_toxin | e4ls4A1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YafQ_toxin | ECOD (1.6) |
B | YafQ_toxin | e4ls4B1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YafQ_toxin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.2310.20 | Alpha Beta | 2-Layer Sandwich | YaeB-like fold | RelE-like | CATH (4.3.0) |
B | 3.30.2310.20 | Alpha Beta | 2-Layer Sandwich | YaeB-like fold | RelE-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05016 | ParE toxin of type II toxin-antitoxin system, parDE (ParE_toxin) | ParE toxin of type II toxin-antitoxin system, parDE | ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralised by the antitoxin ParD. The family also encompasses RelE/ParE described in [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007712 | Toxin-antitoxin system, RelE/ParE toxin family | Family | |
IPR004386 | Toxin-antitoxin system, YafQ-like toxin | Family | |
IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily |