Annotations: 4LR3

Crystal structure of E. coli YfbU at 2.5 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4lr3p_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
O	d4lr3o_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
N	d4lr3n_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
M	d4lr3m_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
L	d4lr3l_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
K	d4lr3k_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
J	d4lr3j_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
I	d4lr3i_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H	d4lr3h_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G	d4lr3g_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
F	d4lr3f_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E	d4lr3e_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d4lr3d_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d4lr3c_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d4lr3b_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d4lr3a_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	QueF	e4lr3P1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
O	QueF	e4lr3O1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
N	QueF	e4lr3N1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
M	QueF	e4lr3M1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
L	QueF	e4lr3L1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
K	QueF	e4lr3K1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
J	QueF	e4lr3J1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
I	QueF	e4lr3I1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
H	QueF	e4lr3H1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
G	QueF	e4lr3G1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
F	QueF	e4lr3F1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
E	QueF	e4lr3E1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
D	QueF	e4lr3D1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
C	QueF	e4lr3C1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
B	QueF	e4lr3B1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)
A	QueF	e4lr3A1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: QueF	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
P	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
O	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
O	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
N	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
N	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
M	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
M	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
L	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
L	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
K	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
K	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
J	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
J	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
I	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
I	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
H	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
H	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
G	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
G	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
F	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
F	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
E	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
E	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
D	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
D	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
C	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
C	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
B	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
B	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
A	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
A	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005587	Uncharacterised protein family UPF0304, YfbU	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023146	YfbU, alpha-helical bundle domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023145	YfbU, helix-hairpin domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

4LR3 | pdb_00004lr3

Crystal structure of E. coli YfbU at 2.5 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage