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 4LCK | pdb_00004lck

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyL30e-like 8063964 3001739 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyL30e-like 8063964 3001739 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DP53e4lckD1 A: alpha arraysX: Alpha-beta plaitsH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: P53ECOD (v295.2)
AP53e4lckA1 A: alpha arraysX: Alpha-beta plaitsH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: P53ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
A3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F
T-BOX RIBOSWITCH STEM I---
B, E
tRNA-Gly---
A, D
Ribosomal protein YbxF -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, D
IPR023460RNA-binding family, YbxF-likeFamily
A, D
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
A, D
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily