4L5N
Crystallographic Structure of HHV-1 Uracil-DNA Glycosylase complexed with the Bacillus phage PZA inhibitor protein p56
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4l5na_ | Alpha and beta proteins (a/b) | Uracil-DNA glycosylase-like | Uracil-DNA glycosylase-like | Uracil-DNA glycosylase | automated matches | (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ], | SCOPe (2.08) |
B | d4l5nb_ | Alpha and beta proteins (a/b) | Uracil-DNA glycosylase-like | Uracil-DNA glycosylase-like | Uracil-DNA glycosylase | automated matches | (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UDG | e4l5nA1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: UDG | ECOD (1.6) |
B | UDG | e4l5nB1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: UDG | ECOD (1.6) |
C | EUF08387 | e4l5nC1 | A: a+b two layers | X: GP2-like | H: P56 (From Topology) | T: P56 | F: EUF08387 | ECOD (1.6) |
D | EUF08387 | e4l5nD1 | A: a+b two layers | X: GP2-like | H: P56 (From Topology) | T: P56 | F: EUF08387 | ECOD (1.6) |
E | EUF08387 | e4l5nE1 | A: a+b two layers | X: GP2-like | H: P56 (From Topology) | T: P56 | F: EUF08387 | ECOD (1.6) |
F | EUF08387 | e4l5nF1 | A: a+b two layers | X: GP2-like | H: P56 (From Topology) | T: P56 | F: EUF08387 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.470.10 | Alpha Beta | 3-Layer(aba) Sandwich | Uracil-DNA Glycosylase, subunit E | Uracil-DNA glycosylase-like domain | CATH (4.3.0) |
B | 3.40.470.10 | Alpha Beta | 3-Layer(aba) Sandwich | Uracil-DNA Glycosylase, subunit E | Uracil-DNA glycosylase-like domain | CATH (4.3.0) |
C | 6.20.250.30 | Special | Other non-globular | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
D | 6.20.250.30 | Special | Other non-globular | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
E | 6.20.250.30 | Special | Other non-globular | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
F | 6.20.250.30 | Special | Other non-globular | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03167 | Uracil DNA glycosylase superfamily (UDG) | Uracil DNA glycosylase superfamily | - | Domain | |
PF20763 | Phage phi29, UDG inhibitor P56 (UDG-inhib_P56) | Phage phi29, UDG inhibitor P56 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002043 | Uracil-DNA glycosylase family 1 | Family | |
IPR018085 | Uracil-DNA glycosylase, active site | Active Site | |
IPR036895 | Uracil-DNA glycosylase-like domain superfamily | Homologous Superfamily | |
IPR005122 | Uracil-DNA glycosylase-like | Domain | |
IPR049384 | P56 | Family | |
IPR053744 | UDG Inhibitor phi29likevirus | Homologous Superfamily |