4L48
Crystal structure of d78n mutant clavibacter michiganensis expansin in complex with cellohexaose
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DPBB_1_2 | e4l48A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: DPBB_1_2 | ECOD (1.6) |
A | Pollen_allerg_1 | e4l48A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Pollen_allerg_1 | ECOD (1.6) |
B [auth C] | DPBB_1_2 | e4l48C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: DPBB_1_2 | ECOD (1.6) |
B [auth C] | Pollen_allerg_1 | e4l48C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Pollen_allerg_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.40.10 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain | CATH (4.3.0) |
A | 2.60.40.760 | Mainly Beta | Sandwich | Immunoglobulin-like | Expansin, cellulose-binding-like domain | CATH (4.3.0) |
B [auth C] | 2.40.40.10 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain | CATH (4.3.0) |
B [auth C] | 2.60.40.760 | Mainly Beta | Sandwich | Immunoglobulin-like | Expansin, cellulose-binding-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF03330 | Lytic transglycolase (DPBB_1) | Lytic transglycolase | Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold [3,4]. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli [1]. The DPBB fold i ... | Domain |
A, B [auth C] | PF01357 | Expansin C-terminal domain (Expansin_C) | Expansin C-terminal domain | This domain is found at the C-terminus of expansins, plant cell wall proteins involved in the non-enzymatic rearrangement of cell walls during cell growth. It contains the allergens lol PI, PII and PIII from Lolium perenne. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth C] | cellulose binding protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR012291 | CBM2, carbohydrate-binding domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR009009 | RlpA-like protein, double-psi beta-barrel domain | Domain |
A, B [auth C] | IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily |
A, B [auth C] | IPR036749 | Expansin, cellulose-binding-like domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR001547 | Glycoside hydrolase, family 5 | Domain |
A, B [auth C] | IPR008965 | CBM2/CBM3, carbohydrate-binding domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR036908 | RlpA-like domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR007117 | Expansin, cellulose-binding-like domain | Domain |
A, B [auth C] | IPR018087 | Glycoside hydrolase, family 5, conserved site | Conserved Site |
A, B [auth C] | IPR049818 | Expansin EXLX1-like | Family |
A, B [auth C] | IPR001919 | Carbohydrate-binding type-2 domain | Domain |