4KSA
Crystal Structure of Malonyl-CoA decarboxylase from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR127
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8054011 | 3000403 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Malonyl-CoA decarboxylase N-terminal domain-like | 8054010 | 3002263 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8054011 | 3000403 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Malonyl-CoA decarboxylase N-terminal domain-like | 8054010 | 3002263 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Malonyl-CoA decarboxylase N-terminal domain | 8046939 | 4005378 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Malonyl-CoA decarboxylase C-terminal domain | 8047063 | 4005426 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Malonyl-CoA decarboxylase N-terminal domain-like | 8054010 | 3002263 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8054011 | 3000403 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8054011 | 3000403 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Malonyl-CoA decarboxylase N-terminal domain-like | 8054010 | 3002263 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MCD_N | e4ksaA4 | A: alpha superhelices | X: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | H: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | T: Mitochondrial malonyl-CoA decarboxylase helical domain | F: MCD_N | ECOD (1.6) |
A | MCD | e4ksaA3 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: MCD | ECOD (1.6) |
B | MCD_N | e4ksaB2 | A: alpha superhelices | X: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | H: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | T: Mitochondrial malonyl-CoA decarboxylase helical domain | F: MCD_N | ECOD (1.6) |
B | MCD | e4ksaB1 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: MCD | ECOD (1.6) |
C | MCD_N | e4ksaC1 | A: alpha superhelices | X: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | H: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | T: Mitochondrial malonyl-CoA decarboxylase helical domain | F: MCD_N | ECOD (1.6) |
C | MCD | e4ksaC2 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: MCD | ECOD (1.6) |
D | MCD_N | e4ksaD2 | A: alpha superhelices | X: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | H: Mitochondrial malonyl-CoA decarboxylase helical domain (From Topology) | T: Mitochondrial malonyl-CoA decarboxylase helical domain | F: MCD_N | ECOD (1.6) |
D | MCD | e4ksaD1 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: MCD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.630.180 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | CATH (4.3.0) | |
A | 1.20.140.90 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
B | 1.20.140.90 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
B | 3.40.630.150 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Malonyl-CoA decarboxylase, catalytic domain | CATH (4.3.0) |
C | 3.40.630.180 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | CATH (4.3.0) | |
C | 1.20.140.90 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
D | 1.20.140.90 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
D | 3.40.630.150 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Malonyl-CoA decarboxylase, catalytic domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17408 | Malonyl-CoA decarboxylase N-terminal domain (MCD_N) | Malonyl-CoA decarboxylase N-terminal domain | This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that reg ... | Domain | |
PF05292 | Malonyl-CoA decarboxylase C-terminal domain (MCD) | Malonyl-CoA decarboxylase C-terminal domain | This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that reg ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007956 | Malonyl-CoA decarboxylase, C-terminal | Domain | |
IPR038917 | Malonyl-CoA decarboxylase | Family | |
IPR042303 | Malonyl-CoA decarboxylase, C-terminal catalytic domain superfamily | Homologous Superfamily | |
IPR038351 | Malonyl-CoA decarboxylase, N-terminal domain superfamily | Homologous Superfamily | |
IPR035372 | Malonyl-CoA decarboxylase, N-terminal | Domain |