Crystal structure of double-helical CGG-repetitive RNA 19mer complexed with RSS p19
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth D] | d4kq0d1 | Alpha and beta proteins (a+b) | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | automated matches | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| C [auth D] | d4kq0d2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| A | d4kq0a1 | Alpha and beta proteins (a+b) | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | automated matches | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| A | d4kq0a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth D] | RBM39linker | e4kq0D1 | A: beta barrels | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: RBM39linker | ECOD (v294.2) |
| A | RBM39linker | e4kq0A1 | A: beta barrels | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: RBM39linker | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth D] | 3.30.390.180 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
| A | 3.30.390.180 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| B, D [auth E] | 5'-R(P*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*C)-3' | - | - | - |
| A, C [auth D] | RNA silencing suppressor p19 |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, C [auth D] | IPR036131 | Tombusvirus P19 superfamily | Homologous Superfamily |
| A, C [auth D] | IPR004905 | Tombusvirus p19 core protein | Family |
