4JRP
Structure of E. coli Exonuclease I in complex with a 5cy-dT13 oligonucleotide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Ribonuclease H-like | 8044547 | 3000143 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8044547 | 3000143 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | PF00929,PF08411 | e4jrpA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00929,PF08411 | ECOD (1.6) |
D [auth B] | PF00929,PF08411 | e4jrpB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00929,PF08411 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
C [auth A] | 3.30.1520.20 | Alpha Beta | 2-Layer Sandwich | PX Domain | Exonuclease ExoI, domain 2 | CATH (4.3.0) |
C [auth A] | 1.20.1280.70 | Mainly Alpha | Up-down Bundle | Monooxygenase | Exonuclease ExoI, domain 3 | CATH (4.3.0) |
C [auth A] | 1.10.287.1240 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
D [auth B] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
D [auth B] | 3.30.1520.20 | Alpha Beta | 2-Layer Sandwich | PX Domain | Exonuclease ExoI, domain 2 | CATH (4.3.0) |
D [auth B] | 1.20.1280.70 | Mainly Alpha | Up-down Bundle | Monooxygenase | Exonuclease ExoI, domain 3 | CATH (4.3.0) |
D [auth B] | 1.10.287.1240 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF08411 | Exonuclease C-terminal (Exonuc_X-T_C) | Exonuclease C-terminal | - | Family |
C [auth A], D [auth B] | PF00929 | Exonuclease (RNase_T) | Exonuclease | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR038649 | Exonuclease I, SH3-like domain superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR023607 | Exodeoxyribonuclease I | Family |
C [auth A], D [auth B] | IPR034747 | Exonuclease I, SH3-like domain | Domain |
C [auth A], D [auth B] | IPR034748 | Exonuclease I, C-terminal alpha-helical domain | Domain |
C [auth A], D [auth B] | IPR013620 | Exodeoxyribonuclease I, C-terminal | Domain |
C [auth A], D [auth B] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR013520 | Exonuclease, RNase T/DNA polymerase III | Domain |
C [auth A], D [auth B] | IPR022894 | Oligoribonuclease | Family |