4JJP
2.06 Angstrom resolution crystal structure of phosphomethylpyrimidine kinase (thiD)from Clostridium difficile 630
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PfkB | e4jjpA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Ribokinase-like (From Topology) | T: Ribokinase-like | F: PfkB | ECOD (1.6) |
B | PfkB | e4jjpB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Ribokinase-like (From Topology) | T: Ribokinase-like | F: PfkB | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1190.20 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Ribokinase | CATH (4.3.0) |
B | 3.40.1190.20 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Ribokinase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08543 | Phosphomethylpyrimidine kinase (Phos_pyr_kin) | Phosphomethylpyrimidine kinase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004399 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase domain | Domain | |
IPR029056 | Ribokinase-like | Homologous Superfamily | |
IPR013749 | Pyridoxamine kinase/Phosphomethylpyrimidine kinase | Domain |