4JIO
Bro1 V domain and ubiquitin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth U] | SCOP2B Superfamily | Ubiquitin-like | 8066187 | 3000157 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13949 | e4jioA1 | A: alpha duplicates or obligate multimers | X: Alix V domain (From Topology) | H: Alix V domain (From Topology) | T: Alix V domain | F: PF13949 | ECOD (1.6) |
B | PF13949 | e4jioB1 | A: alpha duplicates or obligate multimers | X: Alix V domain (From Topology) | H: Alix V domain (From Topology) | T: Alix V domain | F: PF13949 | ECOD (1.6) |
C [auth U] | PF00240 | e4jioU1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.560 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | alix/aip1 in complex with the ypdl late domain | CATH (4.3.0) |
A | 1.20.140.50 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
B | 1.20.120.560 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | alix/aip1 in complex with the ypdl late domain | CATH (4.3.0) |
B | 1.20.140.50 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
C [auth U] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13949 | ALIX V-shaped domain binding to HIV (ALIX_LYPXL_bnd) | ALIX V-shaped domain binding to HIV | The binding of the LYPxL motif of late HIV p6Gag and EIAV p9Gag to this domain is necessary for viral budding.This domain is generally central between an N-terminal Bro1 domain, Pfam:PF03097 and a C-terminal proline-rich domain. The retroviruses thus ... | Domain | |
C [auth U] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004328 | BRO1 domain | Domain | |
IPR038499 | BRO1 domain superfamily | Homologous Superfamily | |
IPR045251 | Vacuolar protein-sorting protein Bro1-like | Family | |
IPR025304 | ALIX V-shaped domain | Domain | |
C [auth U] | IPR019954 | Ubiquitin conserved site | Conserved Site |
C [auth U] | IPR038587 | Large ribosomal subunit protein eL40 superfamily | Homologous Superfamily |
C [auth U] | IPR000626 | Ubiquitin-like domain | Domain |
C [auth U] | IPR019956 | Ubiquitin domain | Domain |
C [auth U] | IPR001975 | Large ribosomal subunit protein eL40 domain | Domain |
C [auth U] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
C [auth U] | P62987 | :