4JHP
The crystal structure of the RPGR RCC1-like domain in complex with PDE6D
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d4jhpb_ | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | RhoGDI-like | GMP-PDE delta | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | E set domains | 8055021 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | GMP_PDE_delta | e4jhpB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GMP_PDE_delta | ECOD (1.6) |
B [auth C] | RCC1 | e4jhpC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: RCC1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.70.50.40 | Mainly Beta | Distorted Sandwich | Coagulation Factor XIII | Chain A, domain 1 | CATH (4.3.0) |
B [auth C] | 2.130.10.30 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF05351 | GMP-PDE, delta subunit (GMP_PDE_delta) | GMP-PDE, delta subunit | - | Family |
B [auth C] | PF00415 | Regulator of chromosome condensation (RCC1) repeat (RCC1) | Regulator of chromosome condensation (RCC1) repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR008015 | GMP phosphodiesterase, delta subunit | Domain |
A [auth B] | IPR017287 | Retinal rod rhodopsin-sensitive cGMP 3', 5'-cyclic phosphodiesterase, delta subunit | Family |
A [auth B] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
A [auth B] | IPR037036 | GMP phosphodiesterase, delta subunit superfamily | Homologous Superfamily |
B [auth C] | IPR000408 | Regulator of chromosome condensation, RCC1 | Repeat |
B [auth C] | IPR009091 | Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | Homologous Superfamily |
B [auth C] | IPR051709 | Ubiquitin ligases and GTPase regulators | Family |