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 4JDZ | pdb_00004jdz

Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth A]Ribosomal_S3_Ce4jdzA7 A: alpha arraysX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Ribosomal_S3_CECOD (v295.2)
A [auth B]CBM_6e4jdzB3 A: alpha arraysX: PBZ domainH: PBZ domainT: PBZ domainF: CBM_6ECOD (v295.2)
A [auth B]PolyA_pole4jdzB4 A: alpha arraysX: POZ domainH: POZ domainT: POZ domainF: PolyA_polECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth A]2.60.40.1280 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
B [auth A]2.60.40.1290 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
B [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth B]2.60.40.1280 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A [auth B]2.60.40.1290 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth A]Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD- -
A [auth B]Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A]IPR033764SD-repeat containing protein, B domainDomain
B [auth A]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth A]IPR005877YSIRK Gram-positive signal peptideDomain
B [auth A]IPR008966Adhesion domain superfamilyHomologous Superfamily
B [auth A]IPR011252Fibrogen-binding domain 1Homologous Superfamily
B [auth A]IPR050972SDr-likeUnknown
B [auth A]IPR019931LPXTG cell wall anchor motifConserved Site
B [auth A]IPR041171SDR-like Ig domainDomain
A [auth B]IPR033764SD-repeat containing protein, B domainDomain
A [auth B]IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B]IPR005877YSIRK Gram-positive signal peptideDomain
A [auth B]IPR008966Adhesion domain superfamilyHomologous Superfamily
A [auth B]IPR011252Fibrogen-binding domain 1Homologous Superfamily
A [auth B]IPR050972SDr-likeUnknown
A [auth B]IPR019931LPXTG cell wall anchor motifConserved Site
A [auth B]IPR041171SDR-like Ig domainDomain