4JCV
Crystal structure of the RecOR complex in an open conformation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042766 | 3000135 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ArfGap/RecO-like zinc finger | 8042768 | 3000151 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042766 | 3000135 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ArfGap/RecO-like zinc finger | 8042768 | 3000151 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HHH_10 | e4jcvA5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
A | Toprim_4 | e4jcvA6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
A | UNK_F_TYPE | e4jcvA4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
B | HHH_10 | e4jcvB5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
B | Toprim_4 | e4jcvB6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
B | UNK_F_TYPE | e4jcvB4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
D | HHH_10 | e4jcvD5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
D | Toprim_4 | e4jcvD6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
D | UNK_F_TYPE | e4jcvD4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
C | HHH_10 | e4jcvC5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
C | Toprim_4 | e4jcvC6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
C | UNK_F_TYPE | e4jcvC4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
E | RecO_N | e4jcvE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RecO_N | ECOD (1.6) |
E | RecO_C | e4jcvE2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: RecO_C | ECOD (1.6) |
F | RecO_N | e4jcvF2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RecO_N | ECOD (1.6) |
F | RecO_C | e4jcvF1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: RecO_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21176 | RecR, helix-hairpin-helix (RecR_HhH) | RecR, helix-hairpin-helix | - | Motif | |
PF21175 | RecR, C-terminal (RecR_C) | RecR, C-terminal | The bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consist ... | Domain | |
PF02132 | RecR, Cys4-zinc finger motif (RecR_ZnF) | RecR, Cys4-zinc finger motif | - | Motif | |
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family | |
PF02565 | Recombination protein O C terminal (RecO_C) | Recombination protein O C terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023627 | Recombination protein RecR | Homologous Superfamily | |
IPR006171 | TOPRIM domain | Domain | |
IPR015967 | Recombination protein RecR, conserved site | Conserved Site | |
IPR000093 | DNA recombination protein RecR | Family | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain | |
IPR034137 | RecR, TOPRIM domain | Domain | |
IPR022572 | DNA replication/recombination mediator RecO, N-terminal | Domain | |
IPR042242 | Recombination protein O, C-terminal | Homologous Superfamily | |
IPR037278 | ARFGAP/RecO-like zinc finger | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR003717 | Recombination protein O, RecO | Family |