4JCJ
Crystal structure of Isl1 LIM domains with Ldb1 LIM-interaction domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4jcjA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00412 | e4jcjA3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00412 | ECOD (1.6) |
A | PF17916 | e4jcjA4 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF17916 | ECOD (1.6) |
B | F_UNCLASSIFIED | e4jcjB1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00412 | e4jcjB3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00412 | ECOD (1.6) |
B | PF17916 | e4jcjB4 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF17916 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4jcjC1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00412 | e4jcjC3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00412 | ECOD (1.6) |
C | PF17916 | e4jcjC4 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF17916 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
B | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
C | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17916 | LIM interaction domain (LID) (LID) | LIM interaction domain (LID) | LIM-homeodomain (LIM-HD) proteins are transcription factors that are critical in the development of many cell types and tissues. The activity of LIM-HD proteins is dependent on the essential cofactor LIM domain-binding protein 1 (Ldb1). This entry re ... | Domain | |
PF00412 | LIM domain (LIM) | LIM domain | This family represents two copies of the LIM structural domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001781 | Zinc finger, LIM-type | Domain | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR047169 | Insulin gene enhancer protein ISL-1/2-like | Family | |
IPR001356 | Homeodomain | Domain | |
IPR017970 | Homeobox, conserved site | Conserved Site | |
IPR047244 | Insulin gene enhancer protein ISL-1/2-like, LIM domain1 | Domain | |
IPR029005 | LIM-domain binding protein/SEUSS | Family | |
IPR041363 | LIM interaction domain | Domain |