Crystal structure of a NigD-like protein (BF0700) from Bacteroides fragilis NCTC 9343 at 2.50 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | CTD of NigD-like | 8046953 | 4005383 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | NTD of NigD-like | 8047779 | 4005812 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | CTD of NigD-like | 8052335 | 3002106 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Bacterial enterotoxins | 8052334 | 3000434 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Pantoate_ligase | e4j8qA1 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: Pantoate_ligase | ECOD (v294.2) |
| A | CENP-S | e4j8qA2 | A: beta barrels | X: HTH | H: HTH | T: winged helix domain | F: CENP-S | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.50.500 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | NigD-like N-terminal OB domain | CATH (4.3.0) |
| A | 2.60.40.2370 | Mainly Beta | Sandwich | Immunoglobulin-like | NigD-like, C-terminal beta sandwich domain | CATH (4.3.0) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR038143 | NigD-like, C-terminal domain superfamily | Homologous Superfamily | |
| IPR038179 | NigD-like, N-terminal domain superfamily | Homologous Superfamily | |
| IPR035376 | NigD-like, C-terminal domain | Domain | |
| IPR024299 | NigD-like N-terminal OB domain | Domain |
