4IO4
Crystal Structure of the AvGluR1 ligand binding domain complex with serine at 1.94 Angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4io4b1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
B | d4io4b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
A | d4io4a1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
A | d4io4a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | SBP_bac_3_1st | e4io4B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
B | SBP_bac_3_2nd | e4io4B1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_2nd | ECOD (1.6) |
A | SBP_bac_3_1st | e4io4A2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
A | SBP_bac_3_2nd | e4io4A1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family | |
PF00497 | Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3) | Bacterial extracellular solute-binding proteins, family 3 | This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Th ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily | |
IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF | Domain | |
IPR019594 | Ionotropic glutamate receptor, L-glutamate and glycine-binding domain | Domain | |
IPR015683 | Ionotropic glutamate receptor | Family | |
IPR000337 | GPCR, family 3 | Family | |
IPR001320 | Ionotropic glutamate receptor, C-terminal | Domain | |
IPR001828 | Receptor, ligand binding region | Domain |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Other Ion Channels | GluR1 Glutamate receptor ligand binding domain with bound Glu |