4IJD
Crystal structure of methyltransferase domain of human PR domain-containing protein 9
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SET_4 | e4ijdA3 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET_4 | ECOD (1.6) |
A | zf-C2H2_4 | e4ijdA4 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_4 | ECOD (1.6) |
B | SET_4 | e4ijdB1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET_4 | ECOD (1.6) |
B | zf-C2H2_4 | e4ijdB3 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.170.270.10 | Mainly Beta | Beta Complex | Beta-clip-like | SET domain | CATH (4.3.0) |
A | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
B | 2.170.270.10 | Mainly Beta | Beta Complex | Beta-clip-like | SET domain | CATH (4.3.0) |
B | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21549 | PR domain zinc finger protein 2, PR domain (PRDM2_PR) | PR domain zinc finger protein 2, PR domain | This domain is found in PR domain zinc protein 2 from humans (PRDM2) and similar proteins from animals. PRDM2 is a histone methyltransferase that functions as a DNA-binding transcription factor. It contains a PR (PRDI-BF1 and RIZ1 homology) domain, w ... | Domain | |
PF21225 | C2H2-type zinc finger (zf-C2H2_5) | C2H2-type zinc finger | This is a Cys2-His2 zinc finger, the most common type of DNA-binding domain [1]. Members of this group of proteins are usually found in vertebrates. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001909 | Krueppel-associated box | Domain | |
IPR046341 | SET domain superfamily | Homologous Superfamily | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR044417 | PRDM7/PRDM9, PR/SET domain | Domain | |
IPR001214 | SET domain | Domain | |
IPR036051 | KRAB domain superfamily | Homologous Superfamily | |
IPR003655 | Ancestral KRAB domain | Domain | |
IPR019041 | SSXRD motif | Conserved Site | |
IPR048414 | Histone-lysine N-methyltransferase PRDM9-like, C2H2 zinc finger-like | Domain |