4IC1
Crystal structure of SSO0001
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cas_Cas4 | e4ic1A1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
B | Cas_Cas4 | e4ic1B1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
D | Cas_Cas4 | e4ic1D1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
E [auth F] | Cas_Cas4 | e4ic1F1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
F [auth G] | Cas_Cas4 | e4ic1G2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
H [auth I] | Cas_Cas4 | e4ic1I2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
I [auth J] | Cas_Cas4 | e4ic1J2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
J [auth K] | Cas_Cas4 | e4ic1K1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
C | Cas_Cas4 | e4ic1C1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
G [auth H] | Cas_Cas4 | e4ic1H1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Cas_Cas4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
B | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
D | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
E [auth F] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
F [auth G] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
H [auth I] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
I [auth J] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
J [auth K] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
C | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
G [auth H] | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12705 | PD-(D/E)XK nuclease superfamily (PDDEXK_1) | PD-(D/E)XK nuclease superfamily | Members of this family belong to the PD-(D/E)XK nuclease superfamily | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038726 | PD-(D/E)XK endonuclease-like domain, AddAB-type | Domain | |
IPR011604 | PD-(D/E)XK endonuclease-like domain superfamily | Homologous Superfamily | |
IPR051827 | CRISPR-associated exonuclease Cas4 | Family | |
IPR013343 | CRISPR-associated protein Cas4 | Family |