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 4I3R | pdb_00004i3r

Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth L]d4i3rl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth L]d4i3rl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth H]d4i3rh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth G]GP120e4i3rG1 A: alpha arraysX: Repetitive alpha hairpinsH: Ribosomal protein L31e/gp120 outer domainT: Ribosomal protein L31e/gp120 outer domainF: GP120ECOD (v295.2)
C [auth L]YbeYe4i3rL1 A: alpha arraysX: GIY-YIG endonucleaseH: GIY-YIG endonucleaseT: GIY-YIG endonucleaseF: YbeYECOD (v295.2)
B [auth H]YbeYe4i3rH1 A: alpha arraysX: GIY-YIG endonucleaseH: GIY-YIG endonucleaseT: GIY-YIG endonucleaseF: YbeYECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C [auth L]VRC-PG04 mAb, anti-gp120 [HIV-1], neutralizing L-KAPPA Homo sapiens (human) IGKV3-20*01, IGKJ5*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202640-0)
B [auth H]VRC-PG04 mAb, anti-gp120 [HIV-1], neutralizing VH-CH1 Homo sapiens (human) IGHV1-2*02, IGHJ2*01, IGHG1*01, IGHG1*02, IGHG1*04 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202640-0)