4HLQ
Crystal structure of human rab1b bound to GDP and BEF3 in complex with the GAP domain of TBC1D20 from homo sapiens
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057458 | 3002022 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057458 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057458 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057458 | 3002022 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057458 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I | PF00566 | e4hlqI5 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: PF00566 | ECOD (1.6) |
A | PF00566 | e4hlqA5 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: PF00566 | ECOD (1.6) |
C | PF00566 | e4hlqC5 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: PF00566 | ECOD (1.6) |
E | PF00566 | e4hlqE5 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: PF00566 | ECOD (1.6) |
G | PF00566 | e4hlqG5 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: PF00566 | ECOD (1.6) |
B | PF00071 | e4hlqB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
H | PF00071 | e4hlqH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
D | PF00071 | e4hlqD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
F | PF00071 | e4hlqF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
J | PF00071 | e4hlqJ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00566 | Rab-GTPase-TBC domain (RabGAP-TBC) | Rab-GTPase-TBC domain | - | Family | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045913 | GTPase-activating protein TBC20/Gyp8-like | Family | |
IPR035969 | Rab-GAP-TBC domain superfamily | Homologous Superfamily | |
IPR000195 | Rab-GAP-TBC domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR005225 | Small GTP-binding protein domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |