4GY5
Crystal structure of the tandem tudor domain and plant homeodomain of UHRF1 with Histone H3K9me3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | TTD_C | e4gy5B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_C | ECOD (1.6) |
B | TTD_N | e4gy5B3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_N | ECOD (1.6) |
B | PHD_1 | e4gy5B2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_1 | ECOD (1.6) |
C | TTD_C | e4gy5C3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_C | ECOD (1.6) |
C | TTD_N | e4gy5C4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_N | ECOD (1.6) |
D | TTD_C | e4gy5D5 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_C | ECOD (1.6) |
D | TTD_N | e4gy5D6 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_N | ECOD (1.6) |
A | TTD_C | e4gy5A4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_C | ECOD (1.6) |
A | TTD_N | e4gy5A6 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TTD_N | ECOD (1.6) |
A | PHD_1 | e4gy5A5 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.30.30.1150 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
A | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
A | 2.30.30.1150 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12148 | Tandem tudor domain within UHRF1 (TTD) | Tandem tudor domain within UHRF1 | TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 ( ... | Domain | |
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR047406 | E3 ubiquitin-protein ligase UHRF1, ubiquitin-like domain | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR036987 | SRA-YDG superfamily | Homologous Superfamily | |
IPR003105 | SRA-YDG | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR021991 | UHRF1, tandem tudor domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR045134 | UHRF1/2-like | Family | |
IPR000164 | Histone H3/CENP-A | Family | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain |