Annotations: 4GNX

Structure of U. maydis Replication protein A bound to ssDNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Oxidored_q6	e4gnxA1	A: alpha arrays	X: Alpha-beta plaits	H: Family B DNA polymerase insertion domain	T: Family B DNA polymerase insertion domain	F: Oxidored_q6	ECOD (v295.2)
D [auth X]	FtsJ	e4gnxX1	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v295.2)
F [auth Z]	Methyltr_RsmB-F	e4gnxZ2	A: alpha arrays	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Methyltr_RsmB-F	ECOD (v295.2)
F [auth Z]	VanA_C	e4gnxZ1	A: alpha arrays	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: VanA_C	ECOD (v295.2)
C	Rep_fac-A_C	e4gnxC1	A: alpha arrays	X: Ntn/PP2C	H: SH3	T: SH3	F: Rep_fac-A_C	ECOD (v295.2)
C	Nup160	e4gnxC3	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Nup160	ECOD (v295.2)
C	Methyltr_RsmB-F	e4gnxC2	A: alpha arrays	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Methyltr_RsmB-F	ECOD (v295.2)
E [auth Y]	RPA43_OB	e4gnxY2	A: alpha arrays	X: DEATH domain	H: PH domain-like	T: PH domain-like	F: RPA43_OB	ECOD (v295.2)
B	Oxidored_q6	e4gnxB1	A: alpha arrays	X: Alpha-beta plaits	H: Family B DNA polymerase insertion domain	T: Family B DNA polymerase insertion domain	F: Oxidored_q6	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
D [auth X]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
F [auth Z]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
C	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
E [auth Y]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
B	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth X]	PF08661	Replication factor A protein 3 (Rep_fac-A_3)	Replication factor A protein 3	Replication factor A is involved in eukaryotic DNA replication, recombination and repair.	Domain
C, F [auth Z]	PF08646	Replication factor-A C terminal domain (Rep_fac-A_C)	Replication factor-A C terminal domain	This domain is found at the C terminal of replication factor A. Replication factor A (RPA) binds single-stranded DNA and is involved in replication, repair, and recombination of DNA [1].	Domain
C, F [auth Z]	PF01336	OB-fold nucleic acid binding domain (tRNA_anti-codon)	OB-fold nucleic acid binding domain	This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an am ...	This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family [2,3]. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.	Domain
C, F [auth Z]	PF16900	Replication protein A OB domain (REPA_OB_2)	Replication protein A OB domain	Replication protein A contains two OB domains in it's DNA binding region. This is the second of the OB domains [1].	Domain
B, E [auth Y]	PF01336	OB-fold nucleic acid binding domain (tRNA_anti-codon)	OB-fold nucleic acid binding domain	This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an am ...	This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family [2,3]. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth X]	Putative uncharacterized protein	DNA binding binding damaged DNA binding nucleic acid binding single-stranded DNA binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair DNA replication double-strand break repair DNA recombination recombinational repair double-strand break repair via homologous recombination base-excision repair mismatch repair	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork DNA replication factor A complex protein-DNA complex nuclear replication fork intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle nuclear lumen replisome site of double-strand break site of DNA damage
G [auth K], H [auth L]	DNA (25-MER)	-	-	-
C, F [auth Z]	Putative uncharacterized protein	sequence-specific DNA binding DNA binding binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding nucleic acid binding telomeric repeat DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding sequence-specific DNA binding DNA binding binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding nucleic acid binding telomeric repeat DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding damaged DNA binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process telomere maintenance via telomerase telomere organization chromosome organization nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA-templated DNA biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process telomere maintenance via telomerase telomere organization chromosome organization nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening telomere maintenance cellular component organization nucleic acid biosynthetic process organelle organization biosynthetic process cellular component organization or biogenesis DNA biosynthetic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair nucleotide-excision repair sexual reproduction reproductive process meiotic cell cycle cell cycle	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork DNA replication factor A complex protein-DNA complex nuclear replication fork intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle nuclear lumen replisome chromosome, telomeric region chromosomal region
B, E [auth Y]	Putative uncharacterized protein	sequence-specific DNA binding DNA binding binding nucleic acid binding telomeric repeat DNA binding single-stranded DNA binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination cellular response to stress DNA damage response nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair nucleotide-excision repair	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork DNA replication factor A complex protein-DNA complex nuclear replication fork intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle nuclear lumen replisome site of double-strand break site of DNA damage chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth X]	IPR013970	Replication factor A protein 3	Family
A, D [auth X]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
C, F [auth Z]	IPR013955	Replication factor A, C-terminal	Domain
C, F [auth Z]	IPR031657	Replication protein A, OB domain	Domain
C, F [auth Z]	IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Domain
C, F [auth Z]	IPR007199	Replication factor-A protein 1, N-terminal	Domain
C, F [auth Z]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
C, F [auth Z]	IPR047192	Replication factor A, C-terminal, eukaryotes	Domain
C, F [auth Z]	IPR004591	Replication factor A protein 1	Family
B, E [auth Y]	IPR014892	Replication protein A, C-terminal	Domain
B, E [auth Y]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B, E [auth Y]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B, E [auth Y]	IPR040260	Replication factor A protein-like	Family
B, E [auth Y]	IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Domain
B, E [auth Y]	IPR014646	Replication factor A protein 2	Family
B, E [auth Y]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.