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Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) K d4fl4k_ All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Carbohydrate-binding domain Cellulose-binding domain family III Scaffolding dockerin binding protein A, SdbA Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) H d4fl4h_ All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Carbohydrate-binding domain Cellulose-binding domain family III Scaffolding dockerin binding protein A, SdbA Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) E d4fl4e_ All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Carbohydrate-binding domain Cellulose-binding domain family III Scaffolding dockerin binding protein A, SdbA Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) B d4fl4b_ All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Carbohydrate-binding domain Cellulose-binding domain family III Scaffolding dockerin binding protein A, SdbA Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) J d4fl4j1 All alpha proteins Type I dockerin domain Type I dockerin domain automated matches automated matches Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) J d4fl4j2 Artifacts Tags Tags Tags N-terminal Tags Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) G d4fl4g1 All alpha proteins Type I dockerin domain Type I dockerin domain automated matches automated matches Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) G d4fl4g2 Artifacts Tags Tags Tags N-terminal Tags Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) D d4fl4d1 All alpha proteins Type I dockerin domain Type I dockerin domain automated matches automated matches Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) D d4fl4d2 Artifacts Tags Tags Tags N-terminal Tags Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) A d4fl4a1 All alpha proteins Type I dockerin domain Type I dockerin domain automated matches automated matches Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08) A d4fl4a2 Artifacts Tags Tags Tags N-terminal Tags Acetivibrio thermocellus ) [TaxId: 1515 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) K SCOP2B Superfamily Carbohydrate-binding domain 8038326 3000706 SCOP2B (2022-06-29) H SCOP2B Superfamily Carbohydrate-binding domain 8038326 3000706 SCOP2B (2022-06-29) E SCOP2B Superfamily Carbohydrate-binding domain 8038326 3000706 SCOP2B (2022-06-29) B SCOP2B Superfamily Carbohydrate-binding domain 8038326 3000706 SCOP2B (2022-06-29) J SCOP2B Superfamily Type I dockerin domain 8076417 3001894 SCOP2B (2022-06-29) G SCOP2 Family Type I dockerin domain 8076416 4002915 SCOP2 (2022-06-29) G SCOP2 Superfamily Type I dockerin domain 8076417 3001894 SCOP2 (2022-06-29) D SCOP2B Superfamily Type I dockerin domain 8076417 3001894 SCOP2B (2022-06-29) A SCOP2B Superfamily Type I dockerin domain 8076417 3001894 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) L e4fl4L7 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: ECOD (v295.2) I e4fl4I7 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: ECOD (v295.2) F e4fl4F7 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: ECOD (v295.2) C TIM e4fl4C1 A: alpha arrays X: Flavodoxin-like H: SH3 T: SH3 F: TIM ECOD (v295.2) K Dicer_dsRBD e4fl4K2 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: Dicer_dsRBD ECOD (v295.2) H Dicer_dsRBD e4fl4H2 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: Dicer_dsRBD ECOD (v295.2) E Dicer_dsRBD e4fl4E2 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: Dicer_dsRBD ECOD (v295.2) B TIM e4fl4B1 A: alpha arrays X: Flavodoxin-like H: SH3 T: SH3 F: TIM ECOD (v295.2) J PHP e4fl4J2 A: alpha arrays X: Fusion glycoprotein F2 H: Fusion glycoprotein F2 T: Fusion glycoprotein F2 F: PHP ECOD (v295.2) G PHP e4fl4G2 A: alpha arrays X: Fusion glycoprotein F2 H: Fusion glycoprotein F2 T: Fusion glycoprotein F2 F: PHP ECOD (v295.2) D e4fl4D3 A: alpha arrays X: DEATH domain H: PH domain-like T: PH domain-like F: ECOD (v295.2) A TIM e4fl4A1 A: alpha arrays X: Flavodoxin-like H: SH3 T: SH3 F: TIM ECOD (v295.2)
Chains Accession Name Description Comments Source PF00404 Dockerin type I domain (Dockerin_1) Dockerin type I domain The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calciu ... The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium [2]. This family contains two copies of the repeat. Domain
Chains Polymer Molecular Function Biological Process Cellular Component Cellulosome anchoring protein cohesin region Scaffolding dockerin binding protein A Glycoside hydrolase family 9 -
Chains Accession Name Type IPR002105 Dockerin type I repeat Repeat IPR016134 Dockerin domain Domain IPR018247 EF-Hand 1, calcium-binding site Binding Site IPR036439 Dockerin domain superfamily Homologous Superfamily IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily Homologous Superfamily IPR008969 Carboxypeptidase-like, regulatory domain superfamily Homologous Superfamily IPR002102 Cellulosome anchoring protein, cohesin domain Domain IPR051465 Cell_Envelope_Struct_Comp Unknown IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily Homologous Superfamily IPR002102 Cellulosome anchoring protein, cohesin domain Domain IPR001119 S-layer homology domain Domain IPR002105 Dockerin type I repeat Repeat IPR016134 Dockerin domain Domain IPR018247 EF-Hand 1, calcium-binding site Binding Site IPR008928 Six-hairpin glycosidase superfamily Homologous Superfamily IPR012341 Six-hairpin glycosidase-like superfamily Homologous Superfamily IPR018221 Glycoside hydrolase family 9, His active site Active Site IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites Active Site IPR013783 Immunoglobulin-like fold Homologous Superfamily IPR014756 Immunoglobulin E-set Homologous Superfamily IPR001701 Glycoside hydrolase family 9 Domain IPR036439 Dockerin domain superfamily Homologous Superfamily IPR004197 Cellulase, Ig-like domain Domain