Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ribosomal_L7Ae | e4fibA1 | A: beta barrels | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB | T: C-terminal UvrC-binding domain of UvrB | F: Ribosomal_L7Ae | ECOD (v294.2) |
| A | Glyco_hydro_18 | e4fibA2 | A: beta barrels | X: C-terminal domain in some PLP-dependent transferases | H: C-terminal domain in some PLP-dependent transferases | T: C-terminal domain in some PLP-dependent transferases | F: Glyco_hydro_18 | ECOD (v294.2) |
| B | Ribosomal_L7Ae | e4fibB1 | A: beta barrels | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB | T: C-terminal UvrC-binding domain of UvrB | F: Ribosomal_L7Ae | ECOD (v294.2) |
| B | Glyco_hydro_18 | e4fibB2 | A: beta barrels | X: C-terminal domain in some PLP-dependent transferases | H: C-terminal domain in some PLP-dependent transferases | T: C-terminal domain in some PLP-dependent transferases | F: Glyco_hydro_18 | ECOD (v294.2) |
| C | Ribosomal_L7Ae | e4fibC1 | A: beta barrels | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB | T: C-terminal UvrC-binding domain of UvrB | F: Ribosomal_L7Ae | ECOD (v294.2) |
| C | Glyco_hydro_18 | e4fibC2 | A: beta barrels | X: C-terminal domain in some PLP-dependent transferases | H: C-terminal domain in some PLP-dependent transferases | T: C-terminal domain in some PLP-dependent transferases | F: Glyco_hydro_18 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.30.30.1130 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| A | 2.40.10.520 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
| B | 2.30.30.1130 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| B | 2.40.10.520 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
| C | 2.30.30.1130 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| C | 2.40.10.520 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07563 | Protein of unknown function (DUF1541) (DUF1541) | Protein of unknown function (DUF1541) | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR011438 | Domain of unknown function DUF1541 | Domain |














