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 4F78 | pdb_00004f78

Crystal Structure of Vancomycin Resistance D,D-dipeptidase VanXYg

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFe_bilin_rede4f78A1 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: Fe_bilin_redECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.200.180 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
A3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
ARO:3003069vanXY gene in vanG clusterAlso known as vanXYG, is a vanXY variant found in the vanG gene cluster.CARD (4.0.2)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
ARO:3000496vanXYpeptide antibiotic, glycopeptide antibiotic, nonribosomal peptide antibioticsantibiotic target alterationCARD (4.0.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D,D-dipeptidase/D,D-carboxypeptidase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR058233D,D-carboxypeptidase/D,D-dipeptidase VanXYFamily
IPR052179D-alanyl-D-alanine carboxypeptidase-likeFamily
IPR009045Peptidase M74/Hedgehog-like, zinc-binding domain superfamilyHomologous Superfamily
IPR003709D-alanyl-D-alanine carboxypeptidase-like, core domainDomain