4F1N
Crystal structure of Kluyveromyces polysporus Argonaute with a guide RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | N-terminal domain of argonaute | 8053662 | 4004602 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PAZ domain | 8053663 | 4000853 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Mid domain of argonaute | 8053664 | 4004605 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PIWI domain | 8053665 | 4002242 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain, RBD | 8053671 | 3000110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PAZ domain | 8053672 | 3001750 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mid domain of argonaute | 8053673 | 3002210 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8053674 | 3000143 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8053674 | 3000143 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Mid domain of argonaute | 8053673 | 3002210 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAZ_1 | e4f1nA3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ_1 | ECOD (1.6) |
A | ArgoL1 | e4f1nA2 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: ArgoL1 | ECOD (1.6) |
A | EUF08365 | e4f1nA1 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08365 | ECOD (1.6) |
A | Piwi_N_1 | e4f1nA4 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N_1 | ECOD (1.6) |
A | Piwi_C | e4f1nA5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C | ECOD (1.6) |
C [auth B] | PAZ_1 | e4f1nB6 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ_1 | ECOD (1.6) |
C [auth B] | ArgoL1 | e4f1nB5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: ArgoL1 | ECOD (1.6) |
C [auth B] | EUF08365 | e4f1nB4 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08365 | ECOD (1.6) |
C [auth B] | Piwi_N_1 | e4f1nB3 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N_1 | ECOD (1.6) |
C [auth B] | Piwi_C | e4f1nB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF18351 | Fungal Argonaute N-terminal domain (Ago_N_1) | Fungal Argonaute N-terminal domain | The AGO (Argonaute) proteins have four domains: an N-terminal domain, the PAZ domain, the MID domain and the PIWI domain. This entry is for the N-terminal domain. The N-terminal domain of AGOs is the most variable domain. Compared with prokaryotic Ar ... | Domain |
A, C [auth B] | PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
A, C [auth B] | PF02170 | PAZ domain (PAZ) | PAZ domain | This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel ... | Domain |
A, C [auth B] | PF18236 | Argonaute N domain (AGO_N) | Argonaute N domain | This is the N domain often found in the N-terminal region of Argonaute (AGO) present in Kluyveromyces polyspora. AGO forms part of the RNA-induced silencing complex that mediates the gene silencing pathway, RNA interference. The N domain blocks the n ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C [auth B] | KpAGO |
| - | - |
B [auth E], D [auth F] | RNA 5'-R(P*UP*AP*AP*AP*AP*AP*AP*AP*A)-3' | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR040937 | Argonaute, N-terminal | Domain |
A, C [auth B] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, C [auth B] | IPR036085 | PAZ domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR040588 | Argonaute, N domain | Domain |
A, C [auth B] | IPR003165 | Piwi domain | Domain |
A, C [auth B] | IPR003100 | PAZ domain | Domain |
A, C [auth B] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |