4F02
Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RRM_1 | e4f02A2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
A | RRM_1_7 | e4f02A1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
D | RRM_1 | e4f02D3 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
D | RRM_1_7 | e4f02D4 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
D | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 | Family | |
IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein | Domain | |
IPR003954 | RNA recognition motif domain, eukaryote | Domain | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR036053 | PABC (PABP) domain | Homologous Superfamily | |
IPR034364 | PABP, RNA recognition motif 1 | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR045305 | PABP, RNA recognition motif 2 | Domain | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR003307 | W2 domain | Domain | |
IPR003891 | Initiation factor eIF-4 gamma, MA3 | Domain | |
IPR045208 | Initiation factor 4G | Family | |
IPR003890 | MIF4G-like, type 3 | Domain |