4ESV | pdb_00004esv

A New Twist on the Translocation Mechanism of Helicases from the Structure of DnaB with its Substrates

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N [auth L]	e4esvL2	A: DP domain	X: DP domain	H: DP domain	T: YonK	F:	ECOD (20:10:01)
N [auth L]	e4esvL3	A: Thioredoxin-like	X: Thioredoxin-like	H: Thioredoxin-like	T: Exop_C	F:	ECOD (20:10:01)
M [auth K]	e4esvK1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: PEBP-like	T: 2OG-FeII_Oxy_4	F:	ECOD (20:10:01)
L [auth J]	e4esvJ2	A: DP domain	X: DP domain	H: DP domain	T: YonK	F:	ECOD (20:10:01)
L [auth J]	e4esvJ3	A: Thioredoxin-like	X: Thioredoxin-like	H: Thioredoxin-like	T: Exop_C	F:	ECOD (20:10:01)
K [auth I]	e4esvI1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: PEBP-like	T: 2OG-FeII_Oxy_4	F:	ECOD (20:10:01)
J [auth H]	e4esvH1	A: DP domain	X: DP domain	H: DP domain	T: YonK	F:	ECOD (20:10:01)
I [auth G]	e4esvG1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: PEBP-like	T: 2OG-FeII_Oxy_4	F:	ECOD (20:10:01)
H [auth F]	e4esvF1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: PEBP-like	T: 2OG-FeII_Oxy_4	F:	ECOD (20:10:01)
G [auth E]	e4esvE2	A: DP domain	X: DP domain	H: DP domain	T: YonK	F:	ECOD (20:10:01)
G [auth E]	e4esvE3	A: Thioredoxin-like	X: Thioredoxin-like	H: Thioredoxin-like	T: Exop_C	F:	ECOD (20:10:01)
F [auth D]	e4esvD1	A: Alpha-beta plaits	X: Pseudouridine synthase	H: Pseudouridine synthase	T: MG2	F:	ECOD (20:10:01)
E [auth C]	e4esvC1	A: Glucocorticoid receptor-like	X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins	H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins	T: NAPRTase	F:	ECOD (20:10:01)
D [auth B]	e4esvB3	A: Fusion glycoprotein F2	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Clp_N	F:	ECOD (20:10:01)
C [auth A]	e4esvA3	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: Ribosomal_L35p	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N [auth L]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
N [auth L]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
M [auth K]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
M [auth K]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
L [auth J]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
L [auth J]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
K [auth I]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
K [auth I]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
J [auth H]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
J [auth H]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
I [auth G]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
I [auth G]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
H [auth F]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
H [auth F]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
G [auth E]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
G [auth E]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
F [auth D]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
F [auth D]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
E [auth C]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
E [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
D [auth B]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
D [auth B]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C [auth A]	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
C [auth A]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	Replicative helicase	nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA 5'-3' DNA helicase activity catalytic activity macromolecular conformation isomerase activity binding adenyl ribonucleotide binding nucleotide binding nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA 5'-3' DNA helicase activity catalytic activity macromolecular conformation isomerase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides identical protein binding protein binding	DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process cellular process macromolecule metabolic process	primosome complex protein-containing complex intracellular anatomical structure protein-DNA complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle replication fork replisome cytoplasm cytosol
B [auth W]	5'-D(PTPTPTPTPTPTPTPTPTPTPTPTP*T)-3'	-	-	-
A [auth V]	5'-D(PTPTPTPTPTPTPTPTPTPTPTPTPTPT)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR007693	DNA helicase, DnaB-like, N-terminal	Domain
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR007694	DNA helicase, DnaB-like, C-terminal	Domain
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR007692	DNA helicase, DnaB type	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR036185	DNA helicase, DnaB-like, N-terminal domain superfamily	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily