4E79
Structure of LpxD from Acinetobacter baumannii at 2.66A resolution (P4322 form)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, N-terminal domain-like | 8046206 | 4004951 | SCOP2 (2022-06-29) |
A | SCOP2 Family | UDP N-acetylglucosamine acyltransferase-like | 8091503 | 4002830 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MurE/MurF N-terminal domain | 8091498 | 3000146 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Trimeric LpxA-like enzymes | 8091504 | 3001804 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091504 | 3001804 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091498 | 3000146 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091498 | 3000146 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091504 | 3001804 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hexapep_2_1 | e4e79A1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
A | Hexapep | e4e79A2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
A | LpxD | e4e79A3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
B | Hexapep_2_1 | e4e79B2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
B | Hexapep | e4e79B1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
B | LpxD | e4e79B3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
C | Hexapep_2_1 | e4e79C1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
C | Hexapep | e4e79C2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
C | LpxD | e4e79C3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00132 | Bacterial transferase hexapeptide (six repeats) (Hexapep) | Bacterial transferase hexapeptide (six repeats) | - | Repeat | |
PF04613 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD (LpxD) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] -> UDP-2,3-bis(3-hydroxytetradec ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011004 | Trimeric LpxA-like superfamily | Homologous Superfamily | |
IPR007691 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD | Family | |
IPR020573 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region | Domain | |
IPR001451 | Hexapeptide repeat | Repeat |