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 4DXK | pdb_00004dxk

Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue, na and phosphate

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAlpha-amylasee4dxkA3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: Alpha-amylaseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
A3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02746Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)Mandelate racemase / muconate lactonizing enzyme, N-terminal domainSCOP reports fold similarity with enolase N-terminal domain. Domain
PF13378Enolase C-terminal domain-like (MR_MLE_C)Enolase C-terminal domain-likeThis domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Mandelate racemase / muconate lactonizing enzyme family protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR034593D-galactonate dehydratase DgoD-likeFamily
IPR013341Mandelate racemase-like, N-terminal domainDomain
IPR029017Enolase-like, N-terminalHomologous Superfamily
IPR036849Enolase-like, C-terminal domain superfamilyHomologous Superfamily
IPR013342Mandelate racemase-like, C-terminal domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SNN Parent Component: ASN

:  AA0302 , AA0593

:  L-aspartimide MOD:00307 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asn) MOD:01940 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asp) MOD:01941