4DGA
TRIMCyp cyclophilin domain from Macaca mulatta: HIV-1 CA(O-loop) complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4dgaa_ | All beta proteins | Cyclophilin-like | Cyclophilin-like | Cyclophilin (peptidylprolyl isomerase) | automated matches | rhesus macaque (Macaca mulatta ) [TaxId: 9544 ], | SCOPe (2.08) |
B | d4dgab_ | All beta proteins | Cyclophilin-like | Cyclophilin-like | Cyclophilin (peptidylprolyl isomerase) | automated matches | rhesus macaque (Macaca mulatta ) [TaxId: 9544 ], | SCOPe (2.08) |
D | d4dgad_ | All alpha proteins | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | HIV-1 capsid protein | HIV-1 (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
C | d4dgac_ | All alpha proteins | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | HIV-1 capsid protein | HIV-1 (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pro_isomerase | e4dgaA1 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: Pro_isomerase | ECOD (1.6) |
B | Pro_isomerase | e4dgaB1 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: Pro_isomerase | ECOD (1.6) |
D | Gag_p24_N | e4dgaD1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
C | Gag_p24_N | e4dgaC1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.100.10 | Mainly Beta | Beta Barrel | Cyclophilin | Cyclophilin-like | CATH (4.3.0) |
B | 2.40.100.10 | Mainly Beta | Beta Barrel | Cyclophilin | Cyclophilin-like | CATH (4.3.0) |
D | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
C | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase) | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ... | Domain | |