4DEQ
Structure of the Neuropilin-1/VEGF-A complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00754 | e4deqA1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF00754 | ECOD (1.6) |
A | PF14554 | e4deqA2 | A: few secondary structure elements | X: Heparin-binding domain from vascular endothelial growth factor (From Topology) | H: Heparin-binding domain from vascular endothelial growth factor (From Topology) | T: Heparin-binding domain from vascular endothelial growth factor | F: PF14554 | ECOD (1.6) |
B | PF00754 | e4deqB1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF00754 | ECOD (1.6) |
B | PF14554 | e4deqB2 | A: few secondary structure elements | X: Heparin-binding domain from vascular endothelial growth factor (From Topology) | H: Heparin-binding domain from vascular endothelial growth factor (From Topology) | T: Heparin-binding domain from vascular endothelial growth factor | F: PF14554 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
A | 2.10.160.10 | Mainly Beta | Ribbon | Vascular Endothelial Growth Factor-165, Heparin-binding Domain | Vascular endothelial growth factor, heparin-binding domain | CATH (4.3.0) |
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 2.10.160.10 | Mainly Beta | Ribbon | Vascular Endothelial Growth Factor-165, Heparin-binding Domain | Vascular endothelial growth factor, heparin-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain | |
PF14554 | VEGF heparin-binding domain (VEGF_C) | VEGF heparin-binding domain | This short domain is found at the C-terminus of VEGF. It has been shown to have heparin binding activity. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR036841 | Vascular endothelial growth factor, heparin-binding domain superfamily | Homologous Superfamily | |
IPR023581 | Platelet-derived growth factor, conserved site | Conserved Site | |
IPR000072 | PDGF/VEGF domain | Domain | |
IPR027928 | Vascular endothelial growth factor, heparin-binding domain | Domain | |
IPR000421 | Coagulation factor 5/8 C-terminal domain | Domain | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR000859 | CUB domain | Domain | |
IPR022579 | Neuropilin, C-terminal | Domain | |
IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR014648 | Neuropilin | Family | |
IPR000998 | MAM domain | Domain |