Annotations: 4D11

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 peptide and manganese (Lower resolution dataset)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	SidC_N	e4d11C1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: SidC_N	ECOD (v295.2)
F	Iso_dh	e4d11F1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Iso_dh	ECOD (v295.2)
E	PemK_toxin	e4d11E2	A: alpha arrays	X: HTH	H: Toll/Interleukin receptor TIR domain	T: Toll/Interleukin receptor TIR domain	F: PemK_toxin	ECOD (v295.2)
E	Iso_dh	e4d11E3	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Iso_dh	ECOD (v295.2)
D	PemK_toxin	e4d11D2	A: alpha arrays	X: HTH	H: Toll/Interleukin receptor TIR domain	T: Toll/Interleukin receptor TIR domain	F: PemK_toxin	ECOD (v295.2)
D	Iso_dh	e4d11D3	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Iso_dh	ECOD (v295.2)
B	PemK_toxin	e4d11B1	A: alpha arrays	X: HTH	H: Toll/Interleukin receptor TIR domain	T: Toll/Interleukin receptor TIR domain	F: PemK_toxin	ECOD (v295.2)
A	PemK_toxin	e4d11A2	A: alpha arrays	X: HTH	H: Toll/Interleukin receptor TIR domain	T: Toll/Interleukin receptor TIR domain	F: PemK_toxin	ECOD (v295.2)
A	Iso_dh	e4d11A3	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Iso_dh	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
F	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
E	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
D	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
B	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
A	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00535	Glycosyl transferase family 2 (Glycos_transf_2)	Glycosyl transferase family 2	Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	Domain
C	PF00652	Ricin-type beta-trefoil lectin domain (Ricin_B_lectin)	Ricin-type beta-trefoil lectin domain		Domain
A, B, D, E, F	PF00535	Glycosyl transferase family 2 (Glycos_transf_2)	Glycosyl transferase family 2	Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	Domain
A, B, D, E, F	PF00652	Ricin-type beta-trefoil lectin domain (Ricin_B_lectin)	Ricin-type beta-trefoil lectin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	PEPTIDE	extracellular matrix binding binding protein binding growth factor binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication cellular process signal transduction multicellular organismal process regulation of developmental process positive regulation of biological process cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication cellular process signal transduction multicellular organismal process regulation of developmental process positive regulation of biological process regulation of biomineral tissue development regulation of bone mineralization positive regulation of ossification positive regulation of developmental process multicellular organism development positive regulation of biomineral tissue development ossification anatomical structure development biomineral tissue development regulation of multicellular organismal process developmental process regulation of multicellular organismal development bone mineralization animal organ development tissue development positive regulation of bone mineralization positive regulation of multicellular organismal process regulation of ossification animal gross anatomical part developmental process cellular developmental process regulation of cell differentiation positive regulation of cell differentiation cell differentiation positive regulation of cellular process positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway positive regulation of signal transduction cellular response to growth factor stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction positive regulation of BMP signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of signaling regulation of BMP signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway response to BMP regulation of response to stimulus regulation of cell communication transforming growth factor beta receptor superfamily signaling pathway response to growth factor positive regulation of signaling chemotaxis taxis response to chemical response to external stimulus locomotion cell population proliferation positive regulation of cell population proliferation positive regulation of osteoblast proliferation osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation regulation of osteoblast differentiation osteoblast differentiation positive regulation of osteoblast differentiation positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility regulation of MAPK cascade intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade cell adhesion positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	extracellular matrix cellular anatomical structure external encapsulating structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle extracellular matrix cellular anatomical structure external encapsulating structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm
C	POLYPEPTIDE GALNAC-TRANSFERASE T2	binding carbohydrate binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding UDP-glycosyltransferase activity polypeptide N-acetylgalactosaminyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity transferase activity acetylgalactosaminyltransferase activity binding carbohydrate binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding UDP-glycosyltransferase activity polypeptide N-acetylgalactosaminyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity transferase activity acetylgalactosaminyltransferase activity hexosyltransferase activity catalytic activity	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process protein O-linked glycosylation via N-acetylgalactosamine biosynthetic process protein O-linked glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of immune effector process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process protein O-linked glycosylation via N-acetylgalactosamine biosynthetic process protein O-linked glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of immune effector process regulation of cellular process immunoglobulin production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of immune effector process regulation of immune system process positive regulation of macromolecule metabolic process positive regulation of immune system process positive regulation of cellular process positive regulation of immunoglobulin production regulation of biosynthetic process production of molecular mediator of immune response regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression immune effector process regulation of gene expression regulation of immunoglobulin production positive regulation of gene expression immune system process positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process regulation of production of molecular mediator of immune response regulation of metabolic process protein maturation	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane extracellular region membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane extracellular region Golgi membrane bounding membrane of organelle organelle membrane Golgi cisterna membrane Golgi cisterna perinuclear region of cytoplasm endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
A, B, D, E, F	POLYPEPTIDE GALNAC-TRANSFERASE T2	binding carbohydrate binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding UDP-glycosyltransferase activity polypeptide N-acetylgalactosaminyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity transferase activity acetylgalactosaminyltransferase activity binding carbohydrate binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding UDP-glycosyltransferase activity polypeptide N-acetylgalactosaminyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity transferase activity acetylgalactosaminyltransferase activity hexosyltransferase activity catalytic activity	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process protein O-linked glycosylation via N-acetylgalactosamine biosynthetic process protein O-linked glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of immune effector process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process protein O-linked glycosylation via N-acetylgalactosamine biosynthetic process protein O-linked glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of immune effector process regulation of cellular process immunoglobulin production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of immune effector process regulation of immune system process positive regulation of macromolecule metabolic process positive regulation of immune system process positive regulation of cellular process positive regulation of immunoglobulin production regulation of biosynthetic process production of molecular mediator of immune response regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression immune effector process regulation of gene expression regulation of immunoglobulin production positive regulation of gene expression immune system process positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process regulation of production of molecular mediator of immune response regulation of metabolic process protein maturation	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane extracellular region membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane extracellular region Golgi membrane bounding membrane of organelle organelle membrane Golgi cisterna membrane Golgi cisterna perinuclear region of cytoplasm endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR012395	IGFBP-related, CNN	Family
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR001007	VWFC domain	Domain
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR000867	Insulin-like growth factor-binding protein, IGFBP	Domain
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR043973	CCN, TSP1 domain	Domain
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR050941	Cellular Communication Network Factor	Family
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR006208	Glycoprotein hormone subunit beta	Domain
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR006207	Cystine knot, C-terminal	Domain
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	IPR017891	Insulin-like growth factor binding protein, N-terminal, Cys-rich conserved site	Conserved Site
C	IPR045885	N-acetylgalactosaminyltransferase	Domain
C	IPR035992	Ricin B-like lectins	Homologous Superfamily
C	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
C	IPR001173	Glycosyltransferase 2-like	Domain
C	IPR000772	Ricin B, lectin domain	Domain
A, B, D, E, F	IPR045885	N-acetylgalactosaminyltransferase	Domain
A, B, D, E, F	IPR035992	Ricin B-like lectins	Homologous Superfamily
A, B, D, E, F	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
A, B, D, E, F	IPR001173	Glycosyltransferase 2-like	Domain
A, B, D, E, F	IPR000772	Ricin B, lectin domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
G [auth L], H [auth O], I [auth P], J [auth X], K [auth Z]	: O00622	rheumatoid arthritis Lung Neoplasms malignant pancreatic neoplasm nephrosclerosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma pituitary cancer breast cancer sarcoidosis diabetes mellitus subependymal giant cell astrocytoma gastric carcinoma interstitial cystitis lung cancer rheumatoid arthritis Lung Neoplasms malignant pancreatic neoplasm nephrosclerosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma pituitary cancer breast cancer sarcoidosis diabetes mellitus subependymal giant cell astrocytoma gastric carcinoma interstitial cystitis lung cancer malignant ependymoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis psoriasis breast carcinoma Sjogren syndrome Emery-Dreifuss muscular dystrophy glioblastoma ulcerative colitis juvenile dermatomyositis lung adenocarcinoma lung carcinoma myopathy osteosarcoma pancreatic intraductal papillary-mucinous carcinoma periodontitis atypical teratoid rhabdoid tumor cystic fibrosis spina bifida facioscapulohumeral muscular dystrophy hepatocellular carcinoma limb-girdle muscular dystrophy lung benign neoplasm
C	: Q10471	metabolic syndrome X pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor breast carcinoma diabetes mellitus lung adenocarcinoma malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma atypical teratoid rhabdoid tumor congenital disorder of glycosylation gastric carcinoma lung cancer metabolic syndrome X pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor breast carcinoma diabetes mellitus lung adenocarcinoma malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma atypical teratoid rhabdoid tumor congenital disorder of glycosylation gastric carcinoma lung cancer malignant glioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis breast cancer Crohn disease glioblastoma lymphoplasmacytic lymphoma malignant mesothelioma oligodendroglioma
A, B, D, E, F	: Q10471	metabolic syndrome X pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor breast carcinoma diabetes mellitus lung adenocarcinoma malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma atypical teratoid rhabdoid tumor congenital disorder of glycosylation gastric carcinoma lung cancer metabolic syndrome X pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor breast carcinoma diabetes mellitus lung adenocarcinoma malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma atypical teratoid rhabdoid tumor congenital disorder of glycosylation gastric carcinoma lung cancer malignant glioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis breast cancer Crohn disease glioblastoma lymphoplasmacytic lymphoma malignant mesothelioma oligodendroglioma