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 4CKV | pdb_00004ckv

Crystal structure of VEGFR-1 domain 2 in presence of Zn

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth X]d4ckvx_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin I set domains automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth X]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054805 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth X]TsaDe4ckvX1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: TsaDECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth X]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth X]PF21339Vascular endothelial growth factor receptor 1-like, Ig-like domain (VEGFR-1-like_Ig-like)Vascular endothelial growth factor receptor 1-like, Ig-like domainThis domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the developmen ...This domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the development of embryonic vasculature, the regulation of angiogenesis and other essential cellular processes. It consists of seven immunoglobulin-like (Ig-like) domains in its extracellular portion. This entry represents the second of these domains [1-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth X]VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth X]IPR001824Tyrosine-protein kinase, receptor class III, conserved siteConserved Site
A [auth X]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth X]IPR008266Tyrosine-protein kinase, active siteActive Site
A [auth X]IPR020635Tyrosine-protein kinase, catalytic domainDomain
A [auth X]IPR000719Protein kinase domainDomain
A [auth X]IPR013106Immunoglobulin V-set domainDomain
A [auth X]IPR003599Immunoglobulin domain subtypeDomain
A [auth X]IPR013151Immunoglobulin-like beta-sandwich domainDomain
A [auth X]IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth X]IPR007110Immunoglobulin-like domainDomain
A [auth X]IPR055229VEGFR1-3, fifth immunoglobulin-like domainDomain
A [auth X]IPR055238VEGFR1-3-like, N-terminal Ig-like domainDomain
A [auth X]IPR017441Protein kinase, ATP binding siteBinding Site
A [auth X]IPR003598Immunoglobulin subtype 2Domain
A [auth X]IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
A [auth X]IPR013098Immunoglobulin I-setDomain
A [auth X]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth X]IPR041348VEGFR-2, transmembrane domainDomain
A [auth X]IPR050122Receptor Tyrosine KinaseFamily
A [auth X]IPR009135Vascular endothelial growth factor receptor 1 (VEGFR1)Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth X]:  P17948