4CGE | pdb_00004cge

Crystal structure of Mycobacterium tuberculosis Resuscitation promoting factor E

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4cgef_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
E	d4cgee_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
D	d4cged_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
C	d4cgec_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
B	d4cgeb_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
A	d4cgea_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Lysozyme-like	8083875	3001879	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Lysozyme-like	8083875	3001879	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Lysozyme-like	8083875	3001879	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Lysozyme-like	8083875	3001879	SCOP2B (2022-06-29)
B	SCOP2 Family	RPF-like	8083874	4002498	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Lysozyme-like	8083875	3001879	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8083875	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	AAA_23	e4cgeF1	A: beta barrels	X: DEATH domain	H: HTH	T: winged helix domain	F: AAA_23	ECOD (v294.2)
E	AAA_23	e4cgeE1	A: beta barrels	X: DEATH domain	H: HTH	T: winged helix domain	F: AAA_23	ECOD (v294.2)
D	AAA_23	e4cgeD1	A: beta barrels	X: DEATH domain	H: HTH	T: winged helix domain	F: AAA_23	ECOD (v294.2)
C	AAA_23	e4cgeC1	A: beta barrels	X: DEATH domain	H: HTH	T: winged helix domain	F: AAA_23	ECOD (v294.2)
B	Acylphosphatase	e4cgeB1	A: beta barrels	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: Acylphosphatase	ECOD (v294.2)
A	Med18	e4cgeA1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Med18	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
F	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)
E	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)
D	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)
C	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)
B	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)
A	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	RESUSCITATION-PROMOTING FACTOR RPFE	hydrolase activity catalytic activity	regulation of biosynthetic process regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process negative regulation of macromolecule metabolic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cell population proliferation regulation of cell population proliferation	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR010618	Resuscitation-promoting factor, core lysozyme-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.