4CCO
60S ribosomal protein L8 histidine hydroxylase (NO66 S373C) in complex with Mn(II), N-oxalylglycine (NOG) and 60S ribosomal protein L8 (RPL8 G214C) peptide fragment (complex-3)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cupin_4 | e4ccoA2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: Cupin_4 | ECOD (1.6) |
A | KOG3706 | e4ccoA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KOG3706 | ECOD (1.6) |
B | Cupin_4 | e4ccoB2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: Cupin_4 | ECOD (1.6) |
B | KOG3706 | e4ccoB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KOG3706 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
A | 1.10.10.1500 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | JmjC domain-containing ribosomal oxygenase (ROX), dimer domain | CATH (4.3.0) |
A | 3.90.930.40 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (4.3.0) |
B | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
B | 1.10.10.1500 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | JmjC domain-containing ribosomal oxygenase (ROX), dimer domain | CATH (4.3.0) |
B | 3.90.930.40 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21233 | Ribosomal oxygenase 1, C-terminal winged helix domain (RIOX1_C_WH) | Ribosomal oxygenase 1, C-terminal winged helix domain | This domain is found in Ribosomal oxygenase 1 from humans (RIOX1) and similar proteins from animals. RIOX1 catalyse histidine- hydroxylation in ribosomal protein rpL28. The protein shows a JmjC domain followed by an helical dimerization domain and a ... | Domain | |
PF08007 | JmjC domain (JmjC_2) | JmjC domain | This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase fro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049043 | RIOX1/NO66-like, C-terminal winged helix domain | Domain | |
IPR003347 | JmjC domain | Domain | |
IPR039994 | Histone lysine demethylase/ribosomal histidine hydroxylase NO66-like | Family | |
IPR022669 | Large ribosomal subunit protein uL2, C-terminal | Domain | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR023672 | Large ribosomal subunit protein uL2, archaeal-type | Family | |
IPR022671 | Large ribosomal subunit protein uL2, conserved site | Conserved Site | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR022666 | Large ribosomal subunit protein uL2, RNA-binding domain | Domain | |
IPR014726 | Large ribosomal subunit protein uL2, domain 3 | Homologous Superfamily | |
IPR002171 | Large ribosomal subunit protein uL2 | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q9H6W3 | :