4BZI
The structure of the COPII coat assembled on membranes
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | vWA-like | 8036410 | 3000832 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | vWA-like | 8036410 | 3000832 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | vWA-like | 8036410 | 3000832 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8038541 | 3000837 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | vWA-like | 8038533 | 3000832 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Helical domain of Sec23/24 | 8038525 | 3001173 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | Helical domain of Sec23/24 | 8038525 | 3001173 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | vWA-like | 8038533 | 3000832 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8038541 | 3000837 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | Helical domain of Sec23/24 | 8038525 | 3001173 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8038541 | 3000837 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | vWA-like | 8038533 | 3000832 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec23_BS | e4bziA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
A | Sec23_helical | e4bziA5 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
A | Gelsolin | e4bziA4 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
A | Sec23_trunk | e4bziA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
A | zf-Sec23_Sec24 | e4bziA3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
C [auth D] | Sec23_BS | e4bziD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
C [auth D] | Sec23_helical | e4bziD4 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
C [auth D] | Gelsolin | e4bziD2 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
C [auth D] | Sec23_trunk | e4bziD3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
C [auth D] | zf-Sec23_Sec24 | e4bziD5 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
F [auth G] | Sec23_BS | e4bziG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
F [auth G] | Sec23_helical | e4bziG5 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
F [auth G] | Gelsolin | e4bziG3 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
F [auth G] | Sec23_trunk | e4bziG4 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
F [auth G] | zf-Sec23_Sec24 | e4bziG2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
B | Ras | e4bziB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
G [auth J] | Ras | e4bziJ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
H [auth K] | Ras | e4bziK1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D [auth E] | Sec23_BS | e4bziE16 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
D [auth E] | Sec23_helical | e4bziE15 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
D [auth E] | Gelsolin | e4bziE19 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
D [auth E] | Sec23_trunk | e4bziE18 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
D [auth E] | zf-Sec23_Sec24 | e4bziE17 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
I [auth L] | Sec23_BS | e4bziL16 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
I [auth L] | Sec23_helical | e4bziL15 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
I [auth L] | Gelsolin | e4bziL19 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
I [auth L] | Sec23_trunk | e4bziL18 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
I [auth L] | zf-Sec23_Sec24 | e4bziL17 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
J [auth M] | Sec23_BS | e4bziM16 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
J [auth M] | Sec23_helical | e4bziM15 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
J [auth M] | Gelsolin | e4bziM19 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
J [auth M] | Sec23_trunk | e4bziM18 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
J [auth M] | zf-Sec23_Sec24 | e4bziM17 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D], F [auth G] | PF04815 | Sec23/Sec24 helical domain (Sec23_helical) | Sec23/Sec24 helical domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |
A, C [auth D], F [auth G] | PF00626 | Gelsolin repeat (Gelsolin) | Gelsolin repeat | - | Domain |
A, C [auth D], F [auth G] | PF08033 | Sec23/Sec24 beta-sandwich domain (Sec23_BS) | Sec23/Sec24 beta-sandwich domain | - | Domain |
A, C [auth D], F [auth G] | PF04811 | Sec23/Sec24 trunk domain (Sec23_trunk) | Sec23/Sec24 trunk domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |
A, C [auth D], F [auth G] | PF04810 | Sec23/Sec24 zinc finger (zf-Sec23_Sec24) | Sec23/Sec24 zinc finger | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |
D [auth E], I [auth L], J [auth M] | PF04815 | Sec23/Sec24 helical domain (Sec23_helical) | Sec23/Sec24 helical domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |
D [auth E], I [auth L], J [auth M] | PF00626 | Gelsolin repeat (Gelsolin) | Gelsolin repeat | - | Domain |
D [auth E], I [auth L], J [auth M] | PF08033 | Sec23/Sec24 beta-sandwich domain (Sec23_BS) | Sec23/Sec24 beta-sandwich domain | - | Domain |
D [auth E], I [auth L], J [auth M] | PF04811 | Sec23/Sec24 trunk domain (Sec23_trunk) | Sec23/Sec24 trunk domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |
D [auth E], I [auth L], J [auth M] | PF04810 | Sec23/Sec24 zinc finger (zf-Sec23_Sec24) | Sec23/Sec24 zinc finger | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain |