4BYY
Apo GlxR
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4byya2 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | automated matches | automated matches | (Corynebacterium glutamicum ) [TaxId: 1718 ], | SCOPe (2.08) |
A | d4byya1 | All beta proteins | Double-stranded beta-helix | cAMP-binding domain-like | automated matches | automated matches | (Corynebacterium glutamicum ) [TaxId: 1718 ], | SCOPe (2.08) |
B | d4byyb2 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | automated matches | automated matches | (Corynebacterium glutamicum ) [TaxId: 1718 ], | SCOPe (2.08) |
B | d4byyb1 | All beta proteins | Double-stranded beta-helix | cAMP-binding domain-like | automated matches | automated matches | (Corynebacterium glutamicum ) [TaxId: 1718 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | cNMP_binding | e4byyA2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
A | HTH_Crp_2 | e4byyA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
B | cNMP_binding | e4byyB2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
B | HTH_Crp_2 | e4byyB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13545 | Crp-like helix-turn-helix domain (HTH_Crp_2) | Crp-like helix-turn-helix domain | This family represents a crp-like helix-turn-helix domain that is likely to bind DNA. | Domain | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050397 | Global Transcriptional Regulators in Environmental Response | Family | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR012318 | Crp-type HTH domain | Domain | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily |